| HapCompass: a fast cycle basis algorithm for accurate haplotype assembly of sequence data D Aguiar, S Istrail Journal of Computational Biology 19 (6), 577-590, 2012 | 139 | 2012 |
| Haplotype assembly in polyploid genomes and identical by descent shared tracts D Aguiar, S Istrail Bioinformatics 29 (13), i352-i360, 2013 | 104 | 2013 |
| Transcriptome of American oysters, Crassostrea virginica, in response to bacterial challenge: insights into potential mechanisms of disease resistance IC McDowell, C Nikapitiya, D Aguiar, CE Lane, S Istrail, M Gomez-Chiarri PLoS One 9 (8), e105097, 2014 | 83 | 2014 |
| A quantitative reference transcriptome for Nematostella vectensis earlyembryonic development: a pipeline for de novo assembly in emergingmodel systems S Tulin, D Aguiar, S Istrail, J Smith EvoDevo 4, 1-15, 2013 | 73 | 2013 |
| AtheroSpectrum reveals novel macrophage foam cell gene signatures associated with atherosclerotic cardiovascular disease risk C Li, L Qu, AJ Matz, PA Murphy, Y Liu, AW Manichaikul, D Aguiar, ... Circulation 145 (3), 206-218, 2022 | 39 | 2022 |
| The Clark phaseable sample size problem: long-range phasing and loss of heterozygosity in GWAS BV Halldórsson, D Aguiar, R Tarpine, S Istrail Journal of Computational Biology 18 (3), 323-333, 2011 | 24 | 2011 |
| Interpretable fake news detection with topic and deep variational models M Hosseini, AJ Sabet, S He, D Aguiar Online Social Networks and Media 36, 100249, 2023 | 20 | 2023 |
| Tumor haplotype assembly algorithms for cancer genomics D Aguiar, WSW Wong, S Istrail Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing, 3, 2014 | 13 | 2014 |
| Haplotype phasing by multi-assembly of shared haplotypes: phase-dependent interactions between rare variants BV Halldórsson, D Aguiar, S Istrail Biocomputing 2011, 88-99, 2011 | 13 | 2011 |
| Bayesian nonparametric discovery of isoforms and individual specific quantification D Aguiar, LF Cheng, B Dumitrascu, F Mordelet, AA Pai, BE Engelhardt Nature communications 9 (1), 1681, 2018 | 11 | 2018 |
| Autoregressive modeling of utility customer outages with deep neural networks K Udeh, DW Wanik, D Cerrai, D Aguiar, E Anagnostou 2022 IEEE 12th Annual Computing and Communication Workshop and Conference …, 2022 | 8 | 2022 |
| Case-level prediction of motion outcomes in civil litigation DJ McConnell, J Zhu, S Pandya, D Aguiar Proceedings of the Eighteenth International Conference on Artificial …, 2021 | 8 | 2021 |
| Evaluating molecular fingerprint-based models of drug side effects against a statistical control BA Alpay, M Gosink, D Aguiar Drug Discovery Today 27 (11), 103364, 2022 | 5 | 2022 |
| Combinatorial and statistical prediction of gene expression from haplotype sequence BA Alpay, P Demetci, S Istrail, D Aguiar Bioinformatics 36 (Supplement_1), i194-i202, 2020 | 5 | 2020 |
| Practical Computational Methods for Regulatory Genomics: A cisGRN-Lexicon and cisGRN-Browser for Gene Regulatory Networks S Istrail, R Tarpine, K Schutter, D Aguiar Computational Biology of Transcription Factor Binding, 369-399, 2010 | 5 | 2010 |
| Deep statistical modelling of nanopore sequencing translocation times reveals latent non-B DNA structures M Hosseini, A Palmer, W Manka, PGS Grady, V Patchigolla, J Bi, ... Bioinformatics 39 (Supplement_1), i242-i251, 2023 | 4 | 2023 |
| Tractatus: an exact and subquadratic algorithm for inferring identical-by-descent multi-shared haplotype tracts D Aguiar, E Morrow, S Istrail Research in Computational Molecular Biology: 18th Annual International …, 2014 | 4 | 2014 |
| DELISHUS: an efficient and exact algorithm for genome-wide detection of deletion polymorphism in autism D Aguiar, BV Halldórsson, EM Morrow, S Istrail Bioinformatics 28 (12), i154-i162, 2012 | 4 | 2012 |
| Trends and barriers of medication treatment for opioid use disorders: a systematic review and meta-analysis M Hutchison, BS Russell, A Leander, N Rickles, D Aguiar, XS Cong, ... Journal of Drug Issues, 00220426231204841, 2023 | 3 | 2023 |
| Differentially methylated regions and methylation QTLs for teen depression and early puberty in the Fragile Families Child Wellbeing Study R De Vito, IN Grabski, D Aguiar, LM Schneper, A Verma, JC Fernandez, ... bioRxiv, 2021.05. 20.444959, 2021 | 3 | 2021 |
