Global phylogeography and ancient evolution of the widespread human gut virus crAssphage RA Edwards, AA Vega, HM Norman, M Ohaeri, K Levi, EA Dinsdale, ... Nature microbiology 4 (10), 1727-1736, 2019 | 220 | 2019 |
High-fiber, whole-food dietary intervention alters the human gut microbiome but not fecal short-chain fatty acids A Oliver, AB Chase, C Weihe, SB Orchanian, SF Riedel, CL Hendrickson, ... Msystems 6 (2), 10.1128/msystems. 00115-21, 2021 | 89 | 2021 |
Predictable molecular adaptation of coevolving Enterococcus faecium and lytic phage EfV12-phi1 S Wandro, A Oliver, T Gallagher, C Weihe, W England, JBH Martiny, ... Frontiers in microbiology 9, 3192, 2019 | 40 | 2019 |
Cervicovaginal microbiome composition is associated with metabolic profiles in healthy pregnancy A Oliver, B LaMere, C Weihe, S Wandro, KL Lindsay, PD Wadhwa, ... MBio 11 (4), 10.1128/mbio. 01851-20, 2020 | 32* | 2020 |
Association of diet and antimicrobial resistance in healthy US adults A Oliver, Z Xue, YT Villanueva, B Durbin-Johnson, Z Alkan, DH Taft, J Liu, ... Mbio 13 (3), e00101-22, 2022 | 31 | 2022 |
Fermentation products in the cystic fibrosis airways induce aggregation and dormancy-associated expression profiles in a CF clinical isolate of Pseudomonas aeruginosa J Phan, T Gallagher, A Oliver, WE England, K Whiteson FEMS microbiology letters 365 (10), fny082, 2018 | 27 | 2018 |
Fecal Microbiota transplantation for the treatment of refractory recurrent urinary tract infection SES Jeney, F Lane, A Oliver, K Whiteson, S Dutta Obstetrics and gynecology 136 (4), 771, 2020 | 17 | 2020 |
Cystic fibrosis-associated Stenotrophomonas maltophilia strain-specific adaptations and responses to pH T Gallagher, J Phan, A Oliver, AB Chase, WE England, S Wandro, ... Journal of bacteriology 201 (7), 10.1128/jb. 00478-18, 2019 | 14 | 2019 |
Comparative genomics of cocci-shaped Sporosarcina strains with diverse spatial isolation A Oliver, M Kay, KK Cooper BMC genomics 19 (1), 1-17, 2018 | 13 | 2018 |
Fiber force: a fiber diet intervention in an advanced course-based undergraduate research experience (CURE) course JM Sewall, A Oliver, K Denaro, AB Chase, C Weihe, M Lay, JBH Martiny, ... Journal of microbiology & biology education 21 (1), 10.1128/jmbe. v21i1. 1991, 2020 | 12 | 2020 |
Genomic Characterization of Salmonella typhimurium DT104 Strains Associated with Cattle and Beef Products CT Parker, S Huynh, A Alexander, AS Oliver, KK Cooper Pathogens 10 (5), 529, 2021 | 11 | 2021 |
Fecal Microbial Community Composition in Myeloproliferative Neoplasm Patients Is Associated with an Inflammatory State A Oliver, K El Alaoui, C Haunschild, J Avelar-Barragan, LF Mendez Luque, ... Microbiology Spectrum 10 (3), e00032-22, 2022 | 10 | 2022 |
Investigating the role of the gut microbiome in the inflammatory state of myeloproliferative neoplasms K Elalaoui, C Weihe, A Oliver, B Craver, HY Lai, S Brooks, D Kim, ... Blood 132, 3051, 2018 | 6 | 2018 |
Low Volume Methodology for Nextera DNA Flex Library Prep Kit (96 Samples) E Adams, S Wandro, J Avelar-Barragan, A Oliver, K Whiteson | 4 | 2020 |
TaxaHFE: A machine learning approach to collapse microbiome datasets using taxonomic structure A Oliver, M Kay, DG Lemay Bioinformatics Advances, vbad165, 2023 | 1 | 2023 |
Bacterial community shifts of commercial apples, oranges, and peaches at different harvest points across multiple growing seasons M Goforth, MA Cooper, AS Oliver, J Pinzon, M Skots, V Obergh, ... Plos one 19 (4), e0297453, 2024 | | 2024 |
From a Remote Amazon Village to the Undergraduate Lab: How Diet and Lifestyle Shape the Human Microbiome A Oliver University of California, Irvine, 2021 | | 2021 |
Comparing Fecal, Saliva, and Chicha Microbiomes Between Mothers and Children in an Indigenous Ecuadorian Cohort E Adams, A Oliver, A Gille, N Alaniz, C Jamie, J Patton, K Whiteson bioRxiv, 2020.10. 02.323097, 2020 | | 2020 |
Supplemental Materials for Fiber Force: A Fiber Diet Intervention in an Advanced Course-Based Undergraduate Research Experience (CURE) Course JM Sewall, A Oliver, K Denaro, AB Chase, C Weihe, M Lay, JBH Martiny, ... | | 2020 |
MULTISCALE'OMICS OF STENOTROPHOMONAS MALTOPHILIA IN PHYSIOLOGICALLY RELEVANT PH T Gallagher, J Phan, A Oliver, A Chase, W England, S Wandro, ... PEDIATRIC PULMONOLOGY 53, 320-320, 2018 | | 2018 |