Optknock: a bilevel programming framework for identifying gene knockout strategies for microbial strain optimization AP Burgard, P Pharkya, CD Maranas Biotechnology and bioengineering 84 (6), 647-657, 2003 | 1504 | 2003 |
Creation and analysis of biochemical constraint-based models using the COBRA Toolbox v. 3.0 L Heirendt, S Arreckx, T Pfau, SN Mendoza, A Richelle, A Heinken, ... Nature protocols 14 (3), 639-702, 2019 | 1032 | 2019 |
Managing demand uncertainty in supply chain planning A Gupta, CD Maranas Computers & chemical engineering 27 (8-9), 1219-1227, 2003 | 832 | 2003 |
OptStrain: a computational framework for redesign of microbial production systems P Pharkya, AP Burgard, CD Maranas Genome research 14 (11), 2367-2376, 2004 | 609 | 2004 |
αBB: A global optimization method for general constrained nonconvex problems IP Androulakis, CD Maranas, CA Floudas Journal of Global Optimization 7, 337-363, 1995 | 581 | 1995 |
Flux coupling analysis of genome-scale metabolic network reconstructions AP Burgard, EV Nikolaev, CH Schilling, CD Maranas Genome research 14 (2), 301-312, 2004 | 511 | 2004 |
OptForce: an optimization procedure for identifying all genetic manipulations leading to targeted overproductions S Ranganathan, PF Suthers, CD Maranas PLoS computational biology 6 (4), e1000744, 2010 | 483 | 2010 |
In silico design and adaptive evolution of Escherichia coli for production of lactic acid SS Fong, AP Burgard, CD Herring, EM Knight, FR Blattner, CD Maranas, ... Biotechnology and bioengineering 91 (5), 643-648, 2005 | 482 | 2005 |
Optimization based automated curation of metabolic reconstructions V Satish Kumar, MS Dasika, CD Maranas BMC bioinformatics 8, 1-16, 2007 | 441 | 2007 |
OptCom: a multi-level optimization framework for the metabolic modeling and analysis of microbial communities AR Zomorrodi, CD Maranas PLoS computational biology 8 (2), e1002363, 2012 | 425 | 2012 |
An optimization framework for identifying reaction activation/inhibition or elimination candidates for overproduction in microbial systems P Pharkya, CD Maranas Metabolic engineering 8 (1), 1-13, 2006 | 393 | 2006 |
Genome-scale metabolic network modeling results in minimal interventions that cooperatively force carbon flux towards malonyl-CoA P Xu, S Ranganathan, ZL Fowler, CD Maranas, MAG Koffas Metabolic engineering 13 (5), 578-587, 2011 | 372 | 2011 |
Synthetic biology of cyanobacteria: unique challenges and opportunities BM Berla, R Saha, CM Immethun, CD Maranas, TS Moon, HB Pakrasi Frontiers in microbiology 4, 246, 2013 | 340 | 2013 |
Finding all solutions of nonlinearly constrained systems of equations CD Maranas, CA Floudas Journal of Global Optimization 7, 143-182, 1995 | 308 | 1995 |
Optimization‐based framework for inferring and testing hypothesized metabolic objective functions AP Burgard, CD Maranas Biotechnology and bioengineering 82 (6), 670-677, 2003 | 294 | 2003 |
Global optimization in generalized geometric programming CD Maranas, CA Floudas Computers & Chemical Engineering 21 (4), 351-369, 1997 | 294 | 1997 |
Creating multiple-crossover DNA libraries independent of sequence identity S Lutz, M Ostermeier, GL Moore, CD Maranas, SJ Benkovic Proceedings of the National Academy of Sciences 98 (20), 11248-11253, 2001 | 273 | 2001 |
GrowMatch: An Automated Method for Reconciling In Silico/In Vivo Growth Predictions VS Kumar, CD Maranas PLoS computational biology 5 (3), e1000308, 2009 | 271 | 2009 |
Mid-term supply chain planning under demand uncertainty: customer demand satisfaction and inventory management A Gupta, CD Maranas, CM McDonald Computers & Chemical Engineering 24 (12), 2613-2621, 2000 | 246 | 2000 |
Zea mays i RS1563: a comprehensive genome-scale metabolic reconstruction of maize metabolism R Saha, PF Suthers, CD Maranas PloS one 6 (7), e21784, 2011 | 235 | 2011 |