| Identification of MS-cleavable and noncleavable chemically cross-linked peptides with MetaMorpheus L Lu, RJ Millikin, SK Solntsev, Z Rolfs, M Scalf, MR Shortreed, LM Smith Journal of proteome research 17 (7), 2370-2376, 2018 | 65 | 2018 |
| An atlas of protein turnover rates in mouse tissues Z Rolfs, BL Frey, X Shi, Y Kawai, LM Smith, NV Welham Nature communications 12 (1), 6778, 2021 | 58 | 2021 |
| Global identification of post-translationally spliced peptides with neo-fusion Z Rolfs, SK Solntsev, MR Shortreed, BL Frey, LM Smith Journal of proteome research 18 (1), 349-358, 2018 | 53 | 2018 |
| Comment on “A subset of HLA-I peptides are not genomically templated: evidence for cis-and trans-spliced peptide ligands” Z Rolfs, M Müller, MR Shortreed, LM Smith, M Bassani-Sternberg Science immunology 4 (38), eaaw1622, 2019 | 45 | 2019 |
| Differentiated fibrocytes assume a functional mesenchymal phenotype with regenerative potential C Ling, K Nishimoto, Z Rolfs, LM Smith, BL Frey, NV Welham Science advances 5 (5), eaav7384, 2019 | 25 | 2019 |
| Internal fragment ions disambiguate and increase identifications in top-down proteomics Z Rolfs, LM Smith Journal of proteome research 20 (12), 5412-5418, 2021 | 14 | 2021 |
| Enhanced proteomic data analysis with MetaMorpheus RM Miller, RJ Millikin, Z Rolfs, MR Shortreed, LM Smith Statistical analysis of proteomic data: Methods and tools, 35-66, 2021 | 8 | 2021 |
| A hybrid spectral library and protein sequence database search strategy for bottom-up and top-down proteomic data analysis Y Dai, RJ Millikin, Z Rolfs, MR Shortreed, LM Smith Journal of proteome research 21 (11), 2609-2618, 2022 | 6 | 2022 |
| An algorithm to improve the speed of Semi and non-specific enzyme searches in proteomics Z Rolfs, RJ Millikin, LM Smith Current bioinformatics 15 (9), 1065-1074, 2020 | 6 | 2020 |
| An atlas of protein turnover rates in mouse tissues. Nat. Commun. 12, 6778 Z Rolfs, BL Frey, X Shi, Y Kawai, LM Smith, NV Welham | 5 | 2021 |
| Automated Assignment of Proteoform Classification Levels Z Rolfs, LM Smith Journal of proteome research 20 (8), 4101-4105, 2021 | 3 | 2021 |
| MetaNetwork enhances biological insights from quantitative proteomics differences by combining clustering and enrichment analyses AV Carr, BL Frey, M Scalf, AJ Cesnik, Z Rolfs, KA Pike, B Yang, MP Keller, ... Journal of proteome research 21 (2), 410-419, 2022 | 2 | 2022 |
| Binary Classifier for Computing Posterior Error Probabilities in MetaMorpheus MR Shortreed, RJ Millikin, L Liu, Z Rolfs, RM Miller, LV Schaffer, BL Frey, ... Journal of proteome research 20 (4), 1997-2004, 2021 | 1 | 2021 |
| How many post-translationally proteasomal spliced HLA-I peptides can be confidently identified in large scale MS/MS data? M Müller, Z Rolfs, R Mylonas, MR Shortreed, LM Smyth, ... Molecular Immunology 150, 12, 2022 | | 2022 |
| This chapter has been published and is reproduced with permission from Z Rolfs, M Müller, MR Shortreed, LM Smith, M Bassani-Sternberg Novel Strategies for Identifying Endogenous Peptides and Determining Protein …, 2020 | | 2020 |
| This chapter is in preparation for publication. Z Rolfs, BL Frey, X Shi, Y Kawai, LM Smith, NV Welham Novel Strategies for Identifying Endogenous Peptides and Determining Protein …, 2020 | | 2020 |
| Novel Strategies for Identifying Endogenous Peptides and Determining Protein Turnover Rates Z Rolfs The University of Wisconsin-Madison, 2020 | | 2020 |
