| Systematic phenotyping and characterization of the 5xFAD mouse model of Alzheimer’s disease S Forner, S Kawauchi, G Balderrama-Gutierrez, EA Kramár, DP Matheos, ... Scientific data 8 (1), 270, 2021 | 189 | 2021 |
| A technology-agnostic long-read analysis pipeline for transcriptome discovery and quantification D Wyman, G Balderrama-Gutierrez, F Reese, S Jiang, S Rahmanian, ... Biorxiv, 672931, 2019 | 105 | 2019 |
| Generation of a humanized Aβ expressing mouse demonstrating aspects of Alzheimer’s disease-like pathology D Baglietto-Vargas, S Forner, L Cai, AC Martini, L Trujillo-Estrada, ... Nature communications 12 (1), 2421, 2021 | 77 | 2021 |
| The genome of Peromyscus leucopus, natural host for Lyme disease and other emerging infections AD Long, J Baldwin-Brown, Y Tao, VJ Cook, G Balderrama-Gutierrez, ... Science Advances 5 (7), eaaw6441, 2019 | 45 | 2019 |
| Systematic assessment of long-read RNA-seq methods for transcript identification and quantification FJ Pardo-Palacios, D Wang, F Reese, M Diekhans, S Carbonell-Sala, ... Nature methods, 1-15, 2024 | 37 | 2024 |
| Mapping and modeling the genomic basis of differential RNA isoform expression at single-cell resolution with LR-Split-seq E Rebboah, F Reese, K Williams, G Balderrama-Gutierrez, C McGill, ... Genome biology 22, 1-28, 2021 | 37 | 2021 |
| The ENCODE uniform analysis pipelines BC Hitz, JW Lee, O Jolanki, MS Kagda, K Graham, P Sud, I Gabdank, ... Research Square, 2023 | 34 | 2023 |
| The EN-TEx resource of multi-tissue personal epigenomes & variant-impact models J Rozowsky, J Gao, B Borsari, YT Yang, T Galeev, G Gürsoy, CB Epstein, ... Cell 186 (7), 1493-1511. e40, 2023 | 22 | 2023 |
| C5aR1 antagonism alters microglial polarization and mitigates disease progression in a mouse model of Alzheimer’s disease A Gomez-Arboledas, K Carvalho, G Balderrama-Gutierrez, SH Chu, ... Acta neuropathologica communications 10 (1), 116, 2022 | 22 | 2022 |
| Modulation of C5a–C5aR1 signaling alters the dynamics of AD progression K Carvalho, ND Schartz, G Balderrama-Gutierrez, HY Liang, SH Chu, ... Journal of neuroinflammation 19 (1), 178, 2022 | 19 | 2022 |
| Transcriptome analysis of heterogeneity in mouse model of metastatic breast cancer AA Ionkina, G Balderrama-Gutierrez, KJ Ibanez, SHD Phan, AN Cortez, ... Breast Cancer Research 23, 1-16, 2021 | 16 | 2021 |
| The ENCODE4 long-read RNA-seq collection reveals distinct classes of transcript structure diversity F Reese, B Williams, G Balderrama-Gutierrez, D Wyman, MH Çelik, ... bioRxiv, 2023 | 14 | 2023 |
| An infection-tolerant mammalian reservoir for several zoonotic agents broadly counters the inflammatory effects of endotoxin G Balderrama-Gutierrez, A Milovic, VJ Cook, MN Islam, Y Zhang, H Kiaris, ... Mbio 12 (2), 10.1128/mbio. 00588-21, 2021 | 11 | 2021 |
| Systematic phenotyping and characterization of the 5xFAD mouse model of Alzheimer’s disease. Sci Data. 2021; 8 (1): 270 S Forner, S Kawauchi, G Balderrama-Gutierrez, EA Kramar, DP Matheos, ... Epub 2021/10/17. doi: 10.1038/s41597-021-01054-y. PubMed PMID: 34654824, 0 | 11 | |
| A technology-agnostic long-read analysis pipeline for transcriptome discovery and quantification. bioRxiv 672931 D Wyman, G Balderrama-Gutierrez, F Reese, S Jiang, S Rahmanian, ... Preprint, 2020 | 10 | 2020 |
| Single-cell and nucleus RNA-seq in a mouse model of AD reveal activation of distinct glial subpopulations in the presence of plaques and tangles G Balderrama-Gutierrez, H Liang, N Rezaie, K Carvalho, S Forner, ... BioRxiv, 2021.09. 29.462436, 2021 | 8 | 2021 |
| Spatially restricting bioorthogonal nucleoside biosynthesis enables selective metabolic labeling of the mitochondrial transcriptome K Nguyen, MB Aggarwal, C Feng, G Balderrama, M Fazio, A Mortazavi, ... ACS chemical biology 13 (6), 1474-1479, 2018 | 8 | 2018 |
| Multi-tissue integrative analysis of personal epigenomes J Rozowsky, J Drenkow, Y Yang, G Gursoy, T Galeev, B Borsari, ... BioRxiv, 2021 | 7 | 2021 |
| A technology-agnostic long-read analysis pipeline for transcriptome discovery and quantification [Internet] D Wyman, G Balderrama-Gutierrez, F Reese, S Jiang, S Rahmanian, ... Cold Spring Harbor Laboratory, 672931, 2020 | 7 | 2020 |
| A technology-agnostic long-read analysis pipeline for transcriptome discovery and quantification. 2020; bioRxiv doi: 18 June 2019, preprint: not peer reviewedhttps D Wyman, G Balderrama-Gutierrez, F Reese, S Jiang, S Rahmanian, ... doi. org/10.1101/672931, 0 | 7 | |
