Insights into the phylogeny and coding potential of microbial dark matter C Rinke, P Schwientek, A Sczyrba, NN Ivanova, IJ Anderson, JF Cheng, ... Nature 499 (7459), 431-437, 2013 | 2366 | 2013 |
Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea RM Bowers, NC Kyrpides, R Stepanauskas, M Harmon-Smith, D Doud, ... Nature biotechnology 35 (8), 725-731, 2017 | 1592 | 2017 |
Metagenomic discovery of biomass-degrading genes and genomes from cow rumen M Hess, A Sczyrba, R Egan, TW Kim, H Chokhawala, G Schroth, S Luo, ... Science 331 (6016), 463-467, 2011 | 1482 | 2011 |
Assembling single-cell genomes and mini-metagenomes from chimeric MDA products S Nurk, A Bankevich, D Antipov, AA Gurevich, A Korobeynikov, A Lapidus, ... Journal of Computational Biology 20 (10), 714-737, 2013 | 1187 | 2013 |
Improving the coverage of the cyanobacterial phylum using diversity-driven genome sequencing PM Shih, D Wu, A Latifi, SD Axen, DP Fewer, E Talla, A Calteau, F Cai, ... Proceedings of the National Academy of Sciences 110 (3), 1053-1058, 2013 | 843 | 2013 |
Assembling genomes and mini-metagenomes from highly chimeric reads S Nurk, A Bankevich, D Antipov, A Gurevich, A Korobeynikov, A Lapidus, ... Research in Computational Molecular Biology: 17th Annual International …, 2013 | 817 | 2013 |
IMG/M v. 5.0: an integrated data management and comparative analysis system for microbial genomes and microbiomes IMA Chen, K Chu, K Palaniappan, M Pillay, A Ratner, J Huang, ... Nucleic acids research 47 (D1), D666-D677, 2019 | 816 | 2019 |
Airway microbiota and bronchial hyperresponsiveness in patients with suboptimally controlled asthma YJ Huang, CE Nelson, EL Brodie, TZ DeSantis, MS Baek, J Liu, T Woyke, ... Journal of Allergy and Clinical Immunology 127 (2), 372-381. e3, 2011 | 785 | 2011 |
Functional characteristics of an endophyte community colonizing rice roots as revealed by metagenomic analysis A Sessitsch, P Hardoim, J Döring, A Weilharter, A Krause, T Woyke, ... Molecular Plant-Microbe Interactions 25 (1), 28-36, 2012 | 767 | 2012 |
Critical assessment of metagenome interpretation—a benchmark of metagenomics software A Sczyrba, P Hofmann, P Belmann, D Koslicki, S Janssen, J Dröge, ... Nature methods 14 (11), 1063-1071, 2017 | 754 | 2017 |
Plant compartment and biogeography affect microbiome composition in cultivated and native Agave species D Coleman‐Derr, D Desgarennes, C Fonseca‐Garcia, S Gross, ... New Phytologist 209 (2), 798-811, 2016 | 679 | 2016 |
Metagenome, metatranscriptome and single-cell sequencing reveal microbial response to Deepwater Horizon oil spill OU Mason, TC Hazen, S Borglin, PSG Chain, EA Dubinsky, JL Fortney, ... The ISME journal 6 (9), 1715-1727, 2012 | 613 | 2012 |
Genome-Based Taxonomic Classification of the Phylum Actinobacteria I Nouioui, L Carro, M García-López, JP Meier-Kolthoff, T Woyke, ... Frontiers in microbiology 9, 2007, 2018 | 607 | 2018 |
A genomic catalog of Earth’s microbiomes S Nayfach, S Roux, R Seshadri, D Udwary, N Varghese, F Schulz, D Wu, ... Nature biotechnology 39 (4), 499-509, 2021 | 602 | 2021 |
Potential for chemolithoautotrophy among ubiquitous bacteria lineages in the dark ocean BK Swan, M Martinez-Garcia, CM Preston, A Sczyrba, T Woyke, D Lamy, ... Science 333 (6047), 1296-1300, 2011 | 600 | 2011 |
IMG 4 version of the integrated microbial genomes comparative analysis system VM Markowitz, IMA Chen, K Palaniappan, K Chu, E Szeto, M Pillay, ... Nucleic acids research 42 (D1), D560-D567, 2014 | 596 | 2014 |
Primer and platform effects on 16S rRNA tag sequencing J Tremblay, K Singh, A Fern, ES Kirton, S He, T Woyke, J Lee, F Chen, ... Frontiers in microbiology 6, 771, 2015 | 549 | 2015 |
Symbiosis insights through metagenomic analysis of a microbial consortium T Woyke, H Teeling, NN Ivanova, M Huntemann, M Richter, FO Gloeckner, ... Nature 443 (7114), 950-955, 2006 | 540 | 2006 |
Genomic features of bacterial adaptation to plants A Levy, I Salas Gonzalez, M Mittelviefhaus, S Clingenpeel, ... Nature genetics 50 (1), 138-150, 2018 | 509 | 2018 |
Complete genome sequence of DSM 30083T, the type strain (U5/41T) of Escherichia coli, and a proposal for delineating subspecies in microbial taxonomy JP Meier-Kolthoff, RL Hahnke, J Petersen, C Scheuner, V Michael, ... Standards in genomic sciences 9, 1-19, 2014 | 490 | 2014 |