| Widespread natural variation of DNA methylation within angiosperms CE Niederhuth, AJ Bewick, L Ji, MS Alabady, KD Kim, Q Li, NA Rohr, ... Genome biology 17, 1-19, 2016 | 498 | 2016 |
| On the origin and evolutionary consequences of gene body DNA methylation AJ Bewick, L Ji, CE Niederhuth, EM Willing, BT Hofmeister, X Shi, L Wang, ... Proceedings of the National Academy of Sciences 113 (32), 9111-9116, 2016 | 295 | 2016 |
| Widespread long-range cis-regulatory elements in the maize genome WA Ricci, Z Lu, L Ji, AP Marand, CL Ethridge, NG Murphy, JM Noshay, ... Nature plants 5 (12), 1237-1249, 2019 | 273 | 2019 |
| Subgenome dominance in an interspecific hybrid, synthetic allopolyploid, and a 140-year-old naturally established neo-allopolyploid monkeyflower PP Edger, R Smith, MR McKain, AM Cooley, M Vallejo-Marin, Y Yuan, ... The Plant Cell 29 (9), 2150-2167, 2017 | 232 | 2017 |
| Genomic distribution of H3K9me2 and DNA methylation in a maize genome PT West, Q Li, L Ji, SR Eichten, J Song, MW Vaughn, RJ Schmitz, ... PloS one 9 (8), e105267, 2014 | 156 | 2014 |
| The evolution of CHROMOMETHYLASES and gene body DNA methylation in plants AJ Bewick, CE Niederhuth, L Ji, NA Rohr, PT Griffin, J Leebens-Mack, ... Genome biology 18, 1-13, 2017 | 145 | 2017 |
| Maize death acids, 9-lipoxygenase–derived cyclopente (a) nones, display activity as cytotoxic phytoalexins and transcriptional mediators SA Christensen, A Huffaker, F Kaplan, J Sims, S Ziemann, G Doehlemann, ... Proceedings of the National Academy of Sciences 112 (36), 11407-11412, 2015 | 145 | 2015 |
| Full-length autonomous transposable elements are preferentially targeted by expression-dependent forms of RNA-directed DNA methylation K Panda, L Ji, DA Neumann, J Daron, RJ Schmitz, RK Slotkin Genome biology 17, 1-19, 2016 | 138 | 2016 |
| The Genome and Methylome of a Beetle with Complex Social Behavior, Nicrophorus vespilloides (Coleoptera: Silphidae) CB Cunningham, L Ji, RAW Wiberg, J Shelton, EC McKinney, DJ Parker, ... Genome Biology and Evolution 7 (12), 3383-3396, 2015 | 103 | 2015 |
| Nociceptor neurons affect cancer immunosurveillance M Balood, M Ahmadi, T Eichwald, A Ahmadi, A Majdoubi, K Roversi, ... Nature 611 (7935), 405-412, 2022 | 85 | 2022 |
| Genome-wide redistribution of H3K27me3 is linked to genotoxic stress and defective growth EY Basenko, T Sasaki, L Ji, CJ Prybol, RM Burckhardt, RJ Schmitz, ... Proceedings of the National Academy of Sciences 112 (46), E6339-E6348, 2015 | 85 | 2015 |
| Base-resolution detection of N4-methylcytosine in genomic DNA using 4mC-Tet-assisted-bisulfite- sequencing M Yu, L Ji, DA Neumann, D Chung, J Groom, J Westpheling, C He, ... Nucleic acids research 43 (21), e148-e148, 2015 | 82 | 2015 |
| Methylated DNA is over-represented in whole-genome bisulfite sequencing data L Ji, T Sasaki, X Sun, P Ma, ZA Lewis, RJ Schmitz Frontiers in genetics 5, 341, 2014 | 80 | 2014 |
| Multiple genes recruited from hormone pathways partition maize diterpenoid defences Y Ding, KM Murphy, E Poretsky, S Mafu, B Yang, SN Char, ... Nature Plants 5 (10), 1043-1056, 2019 | 67 | 2019 |
| Epimutations are associated with CHROMOMETHYLASE 3-induced de novo DNA methylation JM Wendte, Y Zhang, L Ji, X Shi, RR Hazarika, Y Shahryary, F Johannes, ... elife 8, e47891, 2019 | 66 | 2019 |
| Natural variation in DNA methylation homeostasis and the emergence of epialleles Y Zhang, JM Wendte, L Ji, RJ Schmitz Proceedings of the National Academy of Sciences 117 (9), 4874-4884, 2020 | 64 | 2020 |
| Genome-wide reinforcement of DNA methylation occurs during somatic embryogenesis in soybean L Ji, SM Mathioni, S Johnson, D Tucker, AJ Bewick, K Do Kim, J Daron, ... The Plant Cell 31 (10), 2315-2331, 2019 | 64 | 2019 |
| Identification and characterization of the Populus sucrose synthase gene family X An, Z Chen, J Wang, M Ye, L Ji, J Wang, W Liao, H Ma Gene 539 (1), 58-67, 2014 | 63 | 2014 |
| Monitoring the interplay between transposable element families and DNA methylation in maize JM Noshay, SN Anderson, P Zhou, L Ji, W Ricci, Z Lu, MC Stitzer, ... PLoS genetics 15 (9), e1008291, 2019 | 59 | 2019 |
| Crop epigenomics: identifying, unlocking, and harnessing cryptic variation in crop genomes L Ji, DA Neumann, RJ Schmitz Molecular plant 8 (6), 860-870, 2015 | 59 | 2015 |
