| Monocyte-derived alveolar macrophages drive lung fibrosis and persist in the lung over the life span AV Misharin, L Morales-Nebreda, PA Reyfman, CM Cuda, JM Walter, ... Journal of Experimental Medicine 214 (8), 2387-2404, 2017 | 921 | 2017 |
| Polyfunctional responses by human T cells result from sequential release of cytokines Q Han, N Bagheri, EM Bradshaw, DA Hafler, DA Lauffenburger, JC Love Proceedings of the National Academy of Sciences 109 (5), 1607-1612, 2012 | 382 | 2012 |
| Inferring causal molecular networks: empirical assessment through a community-based effort SM Hill, LM Heiser, T Cokelaer, M Unger, NK Nesser, DE Carlin, Y Zhang, ... Nature methods 13 (4), 310-318, 2016 | 246 | 2016 |
| Energy-based descriptors to rapidly predict hydrogen storage in metal–organic frameworks BJ Bucior, NS Bobbitt, T Islamoglu, S Goswami, A Gopalan, T Yildirim, ... Molecular Systems Design & Engineering 4 (1), 162-174, 2019 | 230 | 2019 |
| Exploration of the nanomedicine-design space with high-throughput screening and machine learning G Yamanluirt, EJ Berns, A Xue, A Lee, N Bagheri, M Mrksich, CA Mirkin Spherical Nucleic Acids, 1687-1716, 2020 | 153 | 2020 |
| Quantitative performance metrics for robustness in circadian rhythms N Bagheri, J Stelling, FJ Doyle III Bioinformatics 23 (3), 358-364, 2007 | 70 | 2007 |
| The COMET toolkit for composing customizable genetic programs in mammalian cells PS Donahue, JW Draut, JJ Muldoon, HI Edelstein, N Bagheri, JN Leonard Nature communications 11 (1), 779, 2020 | 69 | 2020 |
| Circadian phase resetting via single and multiple control targets N Bagheri, J Stelling, FJ Doyle III PLoS computational biology 4 (7), e1000104, 2008 | 64 | 2008 |
| Windowed Granger causal inference strategy improves discovery of gene regulatory networks JD Finkle, JJ Wu, N Bagheri Proceedings of the National Academy of Sciences 115 (9), 2252-2257, 2018 | 62 | 2018 |
| A dynamical systems model for combinatorial cancer therapy enhances oncolytic adenovirus efficacy by MEK-inhibition N Bagheri, M Shiina, DA Lauffenburger, WM Korn PLoS computational biology 7 (2), e1001085, 2011 | 60 | 2011 |
| Circadian phase entrainment via nonlinear model predictive control N Bagheri, J Stelling, FJ Doyle III International Journal of Robust and Nonlinear Control: IFAC‐Affiliated …, 2007 | 58 | 2007 |
| Macrophages employ quorum licensing to regulate collective activation JJ Muldoon, Y Chuang, N Bagheri, JN Leonard Nature communications 11 (1), 878, 2020 | 55 | 2020 |
| Multi-class and multi-scale models of complex biological phenomena SY Jessica, N Bagheri Current opinion in biotechnology 39, 167-173, 2016 | 52 | 2016 |
| Synchrony and entrainment properties of robust circadian oscillators N Bagheri, SR Taylor, K Meeker, LR Petzold, FJ Doyle III Journal of The Royal Society Interface 5 (suppl_1), S17-S28, 2008 | 49 | 2008 |
| A support vector machine model provides an accurate transcript-level-based diagnostic for major depressive disorder JS Yu, AY Xue, EE Redei, N Bagheri Translational psychiatry 6 (10), e931-e931, 2016 | 47 | 2016 |
| Agent-based models predict emergent behavior of heterogeneous cell populations in dynamic microenvironments JS Yu, N Bagheri Frontiers in Bioengineering and Biotechnology 8, 249, 2020 | 38 | 2020 |
| Multidimensional assessment of the host response in mechanically ventilated patients with suspected pneumonia JM Walter, Z Ren, T Yacoub, PA Reyfman, RD Shah, H Abdala-Valencia, ... American journal of respiratory and critical care medicine 199 (10), 1225-1237, 2019 | 37 | 2019 |
| Circadian rhythm: A natural, robust, multi-scale control system FJ Doyle III, R Gunawan, N Bagheri, H Mirsky, TL To Computers & chemical engineering 30 (10-12), 1700-1711, 2006 | 34 | 2006 |
| Multiplexing engineered receptors for multiparametric evaluation of environmental ligands RM Hartfield, KA Schwarz, JJ Muldoon, N Bagheri, JN Leonard ACS synthetic biology 6 (11), 2042-2055, 2017 | 32 | 2017 |
| Repressive gene regulation synchronizes development with cellular metabolism JJ Cassidy, SM Bernasek, R Bakker, R Giri, N Peláez, B Eder, ... Cell 178 (4), 980-992. e17, 2019 | 31 | 2019 |
