Prevalence of drug-resistant HIV-1 variants in untreated individuals in Europe: implications for clinical management AMJ Wensing, DA Van De Vijver, G Angarano, B Åsjö, C Balotta, E Boeri, ... The Journal of infectious diseases 192 (6), 958-966, 2005 | 557 | 2005 |
Tracing the HIV-1 subtype B mobility in Europe: a phylogeographic approach D Paraskevis, O Pybus, G Magiorkinis, A Hatzakis, AMJ Wensing, ... Retrovirology 6, 1-11, 2009 | 154 | 2009 |
Dengue diversity across spatial and temporal scales: Local structure and the effect of host population size H Salje, J Lessler, I Maljkovic Berry, MC Melendrez, T Endy, ... Science 355 (6331), 1302-1306, 2017 | 144 | 2017 |
Next generation sequencing and bioinformatics methodologies for infectious disease research and public health: approaches, applications, and considerations for development of … I Maljkovic Berry, MC Melendrez, KA Bishop-Lilly, W Rutvisuttinunt, ... The Journal of infectious diseases 221 (Supplement_3), S292-S307, 2020 | 140 | 2020 |
The calculated genetic barrier for antiretroviral drug resistance substitutions is largely similar for different HIV-1 subtypes DA Van De Vijver, AMJ Wensing, G Angarano, B Åsjö, C Balotta, E Boeri, ... JAIDS Journal of Acquired Immune Deficiency Syndromes 41 (3), 352-360, 2006 | 136 | 2006 |
Using “outbreak science” to strengthen the use of models during epidemics C Rivers, JP Chretien, S Riley, JA Pavlin, A Woodward, D Brett-Major, ... Nature communications 10 (1), 3102, 2019 | 135 | 2019 |
Infectious severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) in exhaled aerosols and efficacy of masks during early mild infection OO Adenaiye, J Lai, PJ Bueno de Mesquita, F Hong, S Youssefi, ... Clinical Infectious Diseases 75 (1), e241-e248, 2022 | 128 | 2022 |
Unequal evolutionary rates in the human immunodeficiency virus type 1 (HIV-1) pandemic: the evolutionary rate of HIV-1 slows down when the epidemic rate increases IM Berry, R Ribeiro, M Kothari, G Athreya, M Daniels, HY Lee, W Bruno, ... Journal of virology 81 (19), 10625-10635, 2007 | 115 | 2007 |
Human APOBEC3 induced mutation of human immunodeficiency virus type-1 contributes to adaptation and evolution in natural infection EY Kim, R Lorenzo-Redondo, SJ Little, YS Chung, PK Phalora, ... PLoS pathogens 10 (7), e1004281, 2014 | 112 | 2014 |
Understanding dengue virus evolution to support epidemic surveillance and counter-measure development S Pollett, MC Melendrez, IM Berry, S Duchêne, H Salje, DAT Cummings, ... Infection, Genetics and Evolution 62, 279-295, 2018 | 73 | 2018 |
Potent Zika and dengue cross-neutralizing antibodies induced by Zika vaccination in a dengue-experienced donor V Dussupt, RS Sankhala, GD Gromowski, G Donofrio, RA De La Barrera, ... Nature medicine 26 (2), 228-235, 2020 | 71 | 2020 |
The burden of dengue fever and chikungunya in southern coastal Ecuador: epidemiology, clinical presentation, and phylogenetics from the first two years of a prospective study AM Stewart-Ibarra, SJ Ryan, A Kenneson, CA King, M Abbott, ... The American journal of tropical medicine and hygiene 98 (5), 1444, 2018 | 68 | 2018 |
Global outbreaks and origins of a chikungunya virus variant carrying mutations which may increase fitness for Aedes aegypti: revelations from the 2016 Mandera, Kenya outbreak IM Berry, F Eyase, S Pollett, SL Konongoi, MG Joyce, K Figueroa, V Ofula, ... The American journal of tropical medicine and hygiene 100 (5), 1249, 2019 | 64* | 2019 |
A comparative recombination analysis of human coronaviruses and implications for the SARS-CoV-2 pandemic S Pollett, MA Conte, M Sanborn, RG Jarman, GM Lidl, K Modjarrad, ... Scientific Reports 11 (1), 17365, 2021 | 54 | 2021 |
SARS-CoV-2 genomic diversity and the implications for qRT-PCR diagnostics and transmission N Sapoval, M Mahmoud, MD Jochum, Y Liu, RAL Elworth, Q Wang, ... Genome Research, 2021 | 54* | 2021 |
Antigenic evolution of dengue viruses over 20 years LC Katzelnick, A Coello Escoto, AT Huang, B Garcia-Carreras, ... Science 374 (6570), 999-1004, 2021 | 48 | 2021 |
Recommended reporting items for epidemic forecasting and prediction research: The EPIFORGE 2020 guidelines S Pollett, MA Johansson, NG Reich, D Brett-Major, SY Del Valle, ... PLoS medicine 18 (10), e1003793, 2021 | 48 | 2021 |
Frequency of influenza H3N2 intra-subtype reassortment: attributes and implications of reassortant spread I Maljkovic Berry, MC Melendrez, T Li, AW Hawksworth, GT Brice, PJ Blair, ... BMC biology 14, 1-19, 2016 | 42 | 2016 |
The X4 phenotype of HIV type 1 evolves from R5 in two children of mothers, carrying X4, and is not linked to transmission P Clevestig, I Maljkovic, C Casper, E Carlenor, S Lindgren, L Naver, ... AIDS Research & Human Retroviruses 21 (5), 371-378, 2005 | 42 | 2005 |
Vaccination of C57/BL6 mice with Dobrava hantavirus nucleocapsid protein in Freund’s adjuvant induced partial protection against challenge J Klingström, I Maljkovic, B Zuber, E Rollman, A Kjerrström, Å Lundkvist Vaccine 22 (29-30), 4029-4034, 2004 | 38 | 2004 |