Endocrine-therapy-resistant ESR1 variants revealed by genomic characterization of breast-cancer-derived xenografts S Li, D Shen, J Shao, R Crowder, W Liu, A Prat, X He, S Liu, J Hoog, C Lu, ... Cell reports 4 (6), 1116-1130, 2013 | 697 | 2013 |
Genomic Hallmarks and Structural Variation in Metastatic Prostate Cancer DA Quigley, HX Dang, SG Zhao, L P, R Aggarwal, JJ Alumkal, A Foye, ... Cell 174 (3), 758-769, 2018 | 654 | 2018 |
INTEGRATE: gene fusion discovery using whole genome and transcriptome data J Zhang, NM White, HK Schmidt, RS Fulton, C Tomlinson, WC Warren, ... Genome research, 26/1/108, 2016 | 129 | 2016 |
Neutrophils promote tumor resistance to radiation therapy AJ Wisdom, CS Hong, AJ Lin, Y Xiang, DE Cooper, J Zhang, ES Xu, ... PNAS 116 (37), 18584-18589, 2019 | 114 | 2019 |
INTEGRATE-Neo: A pipeline for Personalized Gene Fusion Neoantigen Discovery J Zhang, E Mardis, C Maher Bioinformatics 33 (4), 555-557, 2017 | 105 | 2017 |
Functional Annotation of ESR1 Gene Fusions in Estrogen Receptor-Positive Breast Cancer JT Lei*, J Shao*, J Zhang*, M Iglesia*, DW Chan, J Cao, M Anurag, ... Cell Reports 24 (6), 1434-1444, 2018 | 102 | 2018 |
An improved approach for accurate and efficient calling of structural variations with low-coverage sequence data J Zhang, J Wang, Y Wu BMC bioinformatics 13, 1-11, 2012 | 94 | 2012 |
Multi-institutional Analysis Shows that Low PCAT-14 Expression Associates with Poor Outcomes in Prostate Cancer CAM NM. White, SG. Zhao, J. Zhang, EB. Rozycki, HX. Dang, SD. McFadden, AM ... European Urology 71 (2), 257-266, 2017 | 73 | 2017 |
The clonal evolution of metastatic colorectal cancer HX Dang, BA Krasnick, BS White, JG Grossman, MS Strand, J Zhang, ... Science Advances 6 (24), 2020 | 61 | 2020 |
Comprehensive genomic analysis reveals FLT3 activation and a therapeutic strategy for a patient with relapsed adult B lymphoblastic leukemia Experimental Hematology 44 (7), 603-613, 2016 | 54 | 2016 |
SVseq: an approach for detecting exact breakpoints of deletions with low-coverage sequence data J Zhang, Y Wu Bioinformatics 27 (23), 3228-3234, 2011 | 54 | 2011 |
cDNA hybrid capture improves transcriptome analysis on low-input and archived samples CR Cabanski, V Magrini, M Griffith, OL Griffith, S McGrath, J Zhang, ... The Journal of Molecular Diagnostics 16 (4), 440-451, 2014 | 53 | 2014 |
Glutaminase inhibitors induce thiol-mediated oxidative stress and radio-sensitization in treatment resistant cervical cancers R Rashmi, K Jayachandran, J Zhang, V Menon, N Muhammad, M Zahner, ... Molecular Cancer Therapeutics, 2020 | 30 | 2020 |
Radiation-induced circulating myeloid-derived suppressor cells induce systemic lymphopenia after chemoradiotherapy in patients with glioblastoma S Ghosh, J Huang, M Inkman, J Zhang, S Thotala, E Tikhonova, ... Science translational medicine 15 (680), eabn6758, 2023 | 26 | 2023 |
A genomic case study of mixed fibrolamellar hepatocellular carcinoma Annals of Oncology 27 (6), 1148-54, 2016 | 26 | 2016 |
GINDEL: accurate genotype calling of insertions and deletions from low coverage population sequence reads C Chu, J Zhang, Y Wu PloS one 9 (11), e113324, 2014 | 24 | 2014 |
A community challenge to evaluate RNA-seq, fusion detection, and isoform quantification methods for cancer discovery A Creason, D Haan, K Dang, KE Chiotti, M Inkman, A Lamb, T Yu, Y Hu, ... Cell systems 12 (8), 827-838. e5, 2021 | 21 | 2021 |
Standardized Uptake Value for 18F-Fluorodeoxyglucose is a Marker of Inflammatory State and Immune Infiltrate in Cervical Cancer SJK Floberg J.M., Zhang J., Muhammad N., DeWees T.A., Inkman M., Chen K ... Clinical Cancer Research, 2021 | 17 | 2021 |
Genomic characterization and therapeutic targeting of HPV undetected cervical carcinomas FJ Ruiz, A Sundaresan, J Zhang, CS Pedamallu, MK Halle, ... Cancers 13 (18), 4551, 2021 | 16 | 2021 |
HPV transcript expression affects cervical cancer response to chemoradiation FJ Ruiz, M Inkman, R Rashmi, N Muhammad, N Gabriel, CA Miller, ... JCI insight 6 (16), 2021 | 16 | 2021 |