Reading canonical and modified nucleobases in 16S ribosomal RNA using nanopore native RNA sequencing AM Smith, M Jain, L Mulroney, DR Garalde, M Akeson PloS one 14 (5), e0216709, 2019 | 205* | 2019 |
Discrimination among protein variants using an unfoldase-coupled nanopore J Nivala, L Mulroney, G Li, J Schreiber, M Akeson ACS nano 8 (12), 12365-12375, 2014 | 126 | 2014 |
Computational methods for RNA modification detection from nanopore direct RNA sequencing data M Furlan, A Delgado-Tejedor, L Mulroney, M Pelizzola, EM Novoa, ... RNA biology 18 (sup1), 31-40, 2021 | 78 | 2021 |
Nanopore ReCappable sequencing maps SARS-CoV-2 5′ capping sites and provides new insights into the structure of sgRNAs C Ugolini, L Mulroney, A Leger, M Castelli, E Criscuolo, MK Williamson, ... Nucleic Acids Research 50 (6), 3475-3489, 2022 | 19 | 2022 |
Identification of high-confidence human poly (A) RNA isoform scaffolds using nanopore sequencing L Mulroney, MG Wulf, I Schildkraut, G Tzertzinis, J Buswell, M Jain, ... RNA 28 (2), 162-176, 2022 | 15 | 2022 |
Synthesis of modified nucleotide polymers by the poly (U) polymerase Cid1: application to direct RNA sequencing on nanopores JM Vo, L Mulroney, J Quick-Cleveland, M Jain, M Akeson, M Ares RNA 27 (12), 1497-1511, 2021 | 12 | 2021 |
Unveiling the role of PUS7-mediated pseudouridylation in host protein interactions specific for the SARS-CoV-2 RNA genome R Giambruno, E Zacco, C Ugolini, A Vandelli, L Mulroney, M D’Onghia, ... Molecular Therapy-Nucleic Acids 34, 2023 | 6* | 2023 |
De-novo assembly of Limnospira fusiformis using ultra-long reads MK Hicks, TK Tran-Dao, L Mulroney, DL Bernick Frontiers in Microbiology 12, 657995, 2021 | 6 | 2021 |
Benchmarking of computational methods for m6A profiling with Nanopore direct RNA sequencing S Maestri, M Furlan, L Mulroney, L Coscujuela Tarrero, C Ugolini, ... Briefings in Bioinformatics 25 (2), bbae001, 2024 | 5 | 2024 |
Using Nanocompore to Identify RNA Modifications from Direct RNA Nanopore Sequencing Data L Mulroney, E Birney, T Leonardi, F Nicassio Current Protocols 3 (2), e683, 2023 | 2 | 2023 |
Methods of Adding Polymers to Ribonucleic Acids M Ares, L Mulroney, J Vo, M Akeson US Patent App. 18/587,665, 2024 | | 2024 |
Methods of adding polymers to ribonucleic acids M Ares, L Mulroney, J Vo, M Akeson US Patent 11,926,819, 2024 | | 2024 |
Methods of Analyzing Capped Ribonucleic Acids L Mulroney, M Akeson, M Jain, H Olsen US Patent App. 17/056,378, 2021 | | 2021 |
Nanopore ReCappable Sequencing maps SARS-CoV-2 5'capping sites and provides new insights into the structure of sgRNAs (preprint) C Ugolini, L Mulroney, A Leger, M Castelli, E Criscuolo, MK Williamson, ... | | 2021 |
Unfolding and Translocation of Proteins Through an Alpha-Hemolysin Nanopore by ClpXP J Nivala, L Mulroney, Q Luan, R Abu-Shumays, M Akeson Nanopore Technology: Methods and Protocols, 145-155, 2021 | | 2021 |
Identification of Full-Length Transcript Isoforms Using Nanopore Sequencing of Individual RNA Strands L Mulroney PQDT-Global, 2020 | | 2020 |