| A learning-based method for LncRNA-disease association identification combing similarity information and rotation forest ZH Guo, ZH You, YB Wang, HC Yi, ZH Chen IScience 19, 786-795, 2019 | 73 | 2019 |
| iCDA-CGR: Identification of circRNA-disease associations based on Chaos Game Representation K Zheng, ZH You, JQ Li, L Wang, ZH Guo, YA Huang PLoS Computational Biology 16 (5), e1007872, 2020 | 68 | 2020 |
| Prediction of drug–target interactions from multi-molecular network based on deep walk embedding model ZH Chen, ZH You, ZH Guo, HC Yi, GX Luo, YB Wang Frontiers in Bioengineering and Biotechnology 8, 338, 2020 | 67 | 2020 |
| RPI-SE: a stacking ensemble learning framework for ncRNA-protein interactions prediction using sequence information HC Yi, ZH You, MN Wang, ZH Guo, YB Wang, JR Zhou BMC bioinformatics 21, 1-10, 2020 | 48 | 2020 |
| MeSHHeading2vec: a new method for representing MeSH headings as vectors based on graph embedding algorithm ZH Guo, ZH You, DS Huang, HC Yi, K Zheng, ZH Chen, YB Wang Briefings in bioinformatics 22 (2), 2085-2095, 2021 | 44 | 2021 |
| Construction and comprehensive analysis of a molecular association network via lncRNA–miRNA–disease–drug–protein graph ZH Guo, HC Yi, ZH You Cells 8 (8), 866, 2019 | 40 | 2019 |
| A novel method to predict drug-target interactions based on large-scale graph representation learning BW Zhao, ZH You, L Hu, ZH Guo, L Wang, ZH Chen, L Wong Cancers 13 (9), 2111, 2021 | 37 | 2021 |
| SnWF: website fingerprinting attack by ensembling the snapshot of deep learning Y Wang, H Xu, Z Guo, Z Qin, K Ren IEEE Transactions on Information Forensics and Security 17, 1214-1226, 2022 | 26 | 2022 |
| A learning based framework for diverse biomolecule relationship prediction in molecular association network ZH Guo, ZH You, DS Huang, HC Yi, ZH Chen, YB Wang Communications biology 3 (1), 118, 2020 | 25 | 2020 |
| Learning representations to predict intermolecular interactions on large-scale heterogeneous molecular association network HC Yi, ZH You, DS Huang, ZH Guo, KCC Chan, Y Li Iscience 23 (7), 2020 | 22 | 2020 |
| Prediction of drug-target interactions from multi-molecular network based on LINE network representation method BY Ji, ZH You, HJ Jiang, ZH Guo, K Zheng Journal of Translational Medicine 18, 1-11, 2020 | 21 | 2020 |
| MIPDH: a novel computational model for predicting microRNA–mRNA interactions by DeepWalk on a heterogeneous network L Wong, ZH You, ZH Guo, HC Yi, ZH Chen, MY Cao ACS omega 5 (28), 17022-17032, 2020 | 20 | 2020 |
| Base-resolution prediction of transcription factor binding signals by a deep learning framework Q Zhang, Y He, S Wang, Z Chen, Z Guo, Z Cui, Q Liu, DS Huang PLoS computational biology 18 (3), e1009941, 2022 | 17 | 2022 |
| Learning representation of molecules in association network for predicting intermolecular associations HC Yi, ZH You, ZH Guo, DS Huang, KCC Chan IEEE/ACM Transactions on Computational Biology and Bioinformatics 18 (6 …, 2020 | 17 | 2020 |
| iMDA-BN: identification of miRNA-disease associations based on the biological network and graph embedding algorithm K Zheng, ZH You, L Wang, ZH Guo Computational and Structural Biotechnology Journal 18, 2391-2400, 2020 | 16 | 2020 |
| Integrative construction and analysis of molecular association network in human cells by fusing node attribute and behavior information ZH Guo, ZH You, HC Yi Molecular Therapy-Nucleic Acids 19, 498-506, 2020 | 15 | 2020 |
| Construction and analysis of molecular association network by combining behavior representation and node attributes HC Yi, ZH You, ZH Guo Frontiers in Genetics 10, 1106, 2019 | 13 | 2019 |
| Bioentity2vec: Attribute-and behavior-driven representation for predicting multi-type relationships between bioentities ZH Guo, ZH You, YB Wang, DS Huang, HC Yi, ZH Chen GigaScience 9 (6), giaa032, 2020 | 11 | 2020 |
| Predicting drug-target interactions by Node2vec node embedding in molecular associations network ZH Chen, ZH You, ZH Guo, HC Yi, GX Luo, YB Wang Intelligent Computing Theories and Application: 16th International …, 2020 | 9 | 2020 |
| Predicting the sequence specificities of DNA-binding proteins by DNA fine-tuned language model with decaying learning rates Y He, Q Zhang, S Wang, Z Chen, Z Cui, ZH Guo, DS Huang IEEE/ACM Transactions on Computational Biology and Bioinformatics 20 (1 …, 2022 | 5 | 2022 |
