| Comparison of alternative splicing junction detection tools using RNASeq data L Ding, E Rath, Y Bai Current genomics 18 (3), 268-277, 2017 | 46 | 2017 |
| The roles of TGF-β and VEGF pathways in the suppression of antitumor immunity in melanoma and other solid tumors MT Bu, P Chandrasekhar, L Ding, W Hugo Pharmacology & therapeutics 240, 108211, 2022 | 36 | 2022 |
| Identifying interaction clusters for miRNA and mRNA pairs in TCGA network X Dai, L Ding, H Liu, Z Xu, H Jiang, SK Handelman, Y Bai Genes 10 (9), 702, 2019 | 17 | 2019 |
| Immune checkpoint blockade induces distinct alterations in the microenvironments of primary and metastatic brain tumors L Sun, JC Kienzler, JG Reynoso, A Lee, E Shiuan, S Li, J Kim, L Ding, ... Journal of Clinical Investigation 133 (17), e169314, 2023 | 15 | 2023 |
| Clustering analysis of microRNA and mRNA expression data from TCGA using maximum edge-weighted matching algorithms L Ding, Z Feng, Y Bai BMC medical genomics 12, 1-27, 2019 | 15 | 2019 |
| Read-Split-Run: an improved bioinformatics pipeline for identification of genome-wide non-canonical spliced regions using RNA-Seq data Y Bai, J Kinne, B Donham, F Jiang, L Ding, JR Hassler, RJ Kaufman BMC genomics 17, 107-117, 2016 | 11 | 2016 |
| Dissecting the biological relationship between TCGA miRNA and mRNA sequencing data using MMiRNA-Viewer Y Bai, L Ding, S Baker, JM Bai, E Rath, F Jiang, J Wu, H Jiang, G Stuart BMC bioinformatics 17, 63-76, 2016 | 10 | 2016 |
| Antigen presentation by clonally diverse CXCR5+ B cells to CD4 and CD8 T cells is associated with durable response to immune checkpoint inhibitors L Ding, L Sun, MT Bu, Y Zhang, LN Scott, RM Prins, MA Su, MG Lechner, ... Frontiers in Immunology 14, 1176994, 2023 | 9 | 2023 |
| Identification of genome-wide non-canonical spliced regions and analysis of biological functions for spliced sequences using Read-Split-Fly Y Bai, J Kinne, L Ding, EC Rath, A Cox, SD Naidu BMC bioinformatics 18, 37-48, 2017 | 6 | 2017 |
| MMiRNA-Viewer2, a bioinformatics tool for visualizing functional annotation for MiRNA and MRNA pairs in a network Y Bai, S Baker, K Exoo, X Dai, L Ding, NA Khattak, H Li, H Liu, X Liu BMC bioinformatics 21, 1-10, 2020 | 3 | 2020 |
| Characterizing And Quantifying Regulatory Changes In Cancer L Ding | | 2019 |
