| Announcing the worldwide protein data bank H Berman, K Henrick, H Nakamura Nature structural & molecular biology 10 (12), 980-980, 2003 | 2987 | 2003 |
| The worldwide Protein Data Bank (wwPDB): ensuring a single, uniform archive of PDB data H Berman, K Henrick, H Nakamura, JL Markley Nucleic acids research 35 (suppl_1), D301-D303, 2007 | 1236 | 2007 |
| Zc3h12a is an RNase essential for controlling immune responses by regulating mRNA decay K Matsushita, O Takeuchi, DM Standley, Y Kumagai, T Kawagoe, ... Nature 458 (7242), 1185-1190, 2009 | 634 | 2009 |
| Solution structure of a specific DNA complex of the Myb DNA-binding domain with cooperative recognition helices K Ogata, S Morikawa, H Nakamura, A Sekikawa, T Inoue, H Kanai, ... Cell 79 (4), 639-648, 1994 | 613 | 1994 |
| Protein Data Bank (PDB): the single global macromolecular structure archive SK Burley, HM Berman, GJ Kleywegt, JL Markley, H Nakamura, ... Protein crystallography: methods and protocols, 627-641, 2017 | 582 | 2017 |
| Multicanonical ensemble generated by molecular dynamics simulation for enhanced conformational sampling of peptides N Nakajima, H Nakamura, A Kidera The Journal of Physical Chemistry B 101 (5), 817-824, 1997 | 487 | 1997 |
| Roles of electrostatic interaction in proteins H Nakamura Quarterly reviews of biophysics 29 (1), 1-90, 1996 | 377 | 1996 |
| An effective solvation term based on atomic occupancies for use in protein simulations PFW Stouten, C Frömmel, H Nakamura, C Sander Molecular Simulation 10 (2-6), 97-120, 1993 | 364 | 1993 |
| Atomic structure of the RuvC resolvase: a Holliday junction-specific endonuclease from E. coli M Ariyoshi, DG Vassylyev, H Iwasaki, H Nakamura, H Shinagawa, ... Cell 78 (6), 1063-1072, 1994 | 363 | 1994 |
| Solution structure of a DNA-binding unit of Myb: a helix-turn-helix-related motif with conserved tryptophans forming a hydrophobic core. K Ogata, H Hojo, S Aimoto, T Nakai, H Nakamura, A Sarai, S Ishii, ... Proceedings of the National Academy of Sciences 89 (14), 6428-6432, 1992 | 320 | 1992 |
| The cavity in the hydrophobic core of Myb DNA-binding domain is reserved for DNA recognition and trans-activation K Ogata, C Kanei-Ishii, M Sasaki, H Hatanaka, A Nagadoi, M Enari, ... Nature structural biology 3 (2), 178-187, 1996 | 317 | 1996 |
| Disordered domains and high surface charge confer hubs with the ability to interact with multiple proteins in interaction networks A Patil, H Nakamura FEBS letters 580 (8), 2041-2045, 2006 | 310 | 2006 |
| How does RNase H recognize a DNA. RNA hybrid? H Nakamura, Y Oda, S Iwai, H Inoue, E Ohtsuka, S Kanaya, S Kimura, ... Proceedings of the National Academy of Sciences 88 (24), 11535-11539, 1991 | 283 | 1991 |
| Segmental isotope labeling for protein NMR using peptide splicing T Yamazaki, T Otomo, N Oda, Y Kyogoku, K Uegaki, N Ito, Y Ishino, ... Journal of the American Chemical Society 120 (22), 5591-5592, 1998 | 273 | 1998 |
| Computer-aided antibody design D Kuroda, H Shirai, MP Jacobson, H Nakamura Protein engineering, design & selection 25 (10), 507-522, 2012 | 270 | 2012 |
| Structural details of ribonuclease H from Escherichia coli as refined to an atomic resolution K Katayanagi, M Miyagawa, M Matsushima, M Ishikawa, S Kanaya, ... Journal of molecular biology 223 (4), 1029-1052, 1992 | 259 | 1992 |
| Structural classification of CDR‐H3 in antibodies H Shirai, A Kidera, H Nakamura FEBS letters 399 (1-2), 1-8, 1996 | 254 | 1996 |
| Comparison of the free and DNA-complexed forms of the DMA-binding domain from c-Myb K Ogata, S Morikawa, H Nakamura, H Hojo, S Yoshimura, R Zhang, ... Nature structural biology 2 (4), 309-320, 1995 | 216 | 1995 |
| Identification of protein biochemical functions by similarity search using the molecular surface database eF‐site K Kinoshita, H Nakamura Protein Science 12 (8), 1589-1595, 2003 | 209 | 2003 |
| Ovary and ovulation: DNA fragmentation of oocytes in aged mice Y Fujino, K Ozaki, S Yamamasu, F Ito, I Matsuoka, E Hayashi, ... Human reproduction 11 (7), 1480-1483, 1996 | 209 | 1996 |
