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Jue Wang
Jue Wang
在 uw.edu 的电子邮件经过验证 - 首页
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引用次数
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Accurate prediction of protein structures and interactions using a three-track neural network
M Baek, F DiMaio, I Anishchenko, J Dauparas, S Ovchinnikov, GR Lee, ...
Science 373 (6557), 871-876, 2021
36172021
De novo design of protein structure and function with RFdiffusion
JL Watson, D Juergens, NR Bennett, BL Trippe, J Yim, HE Eisenach, ...
Nature 620 (7976), 1089-1100, 2023
4362023
Scaffolding protein functional sites using deep learning
J Wang, S Lisanza, D Juergens, D Tischer, JL Watson, KM Castro, ...
Science 377 (6604), 387-394, 2022
2622022
Broadly applicable and accurate protein design by integrating structure prediction networks and diffusion generative models
JL Watson, D Juergens, NR Bennett, BL Trippe, J Yim, HE Eisenach, ...
BioRxiv, 2022.12. 09.519842, 2022
1762022
Natural variation in preparation for nutrient depletion reveals a cost–benefit tradeoff
J Wang, E Atolia, B Hua, Y Savir, R Escalante-Chong, M Springer
PLoS biology 13 (1), e1002041, 2015
1392015
Galactose metabolic genes in yeast respond to a ratio of galactose and glucose
R Escalante-Chong, Y Savir, SM Carroll, JB Ingraham, J Wang, CJ Marx, ...
Proceedings of the National Academy of Sciences 112 (5), 1636-1641, 2015
1372015
A chromatin-based mechanism for limiting divergent noncoding transcription
S Marquardt, R Escalante-Chong, N Pho, J Wang, LS Churchman, ...
Cell 157 (7), 1712-1723, 2014
1232014
Generalized biomolecular modeling and design with RoseTTAFold All-Atom
R Krishna, J Wang, W Ahern, P Sturmfels, P Venkatesh, I Kalvet, GR Lee, ...
Science 384 (6693), eadl2528, 2024
1042024
Large-effect beneficial synonymous mutations mediate rapid and parallel adaptation in a bacterium
D Agashe, M Sane, K Phalnikar, GD Diwan, A Habibullah, ...
Molecular Biology and Evolution 33 (6), 1542-1553, 2016
742016
Design of proteins presenting discontinuous functional sites using deep learning
D Tischer, S Lisanza, J Wang, R Dong, I Anishchenko, LF Milles, ...
Biorxiv, 2020.11. 29.402743, 2020
422020
Deep learning methods for designing proteins scaffolding functional sites
J Wang, S Lisanza, D Juergens, D Tischer, I Anishchenko, M Baek, ...
BioRxiv, 2021.11. 10.468128, 2021
402021
Improving protein expression, stability, and function with ProteinMPNN
KH Sumida, R Núñez-Franco, I Kalvet, SJ Pellock, BIM Wicky, LF Milles, ...
Journal of the American Chemical Society 146 (3), 2054-2061, 2024
342024
Decoupling transcription factor expression and activity enables dimmer switch gene regulation
C Ricci-Tam, I Ben-Zion, J Wang, J Palme, A Li, Y Savir, M Springer
Science 372 (6539), 292-295, 2021
312021
Polymorphisms in the yeast galactose sensor underlie a natural continuum of nutrient-decision phenotypes
KB Lee, J Wang, J Palme, R Escalante-Chong, B Hua, M Springer
PLoS genetics 13 (5), e1006766, 2017
232017
Enzyme engineering and in vivo testing of a formate reduction pathway
J Wang, K Anderson, E Yang, L He, ME Lidstrom
Synthetic Biology 6 (1), ysab020, 2021
112021
Protein sequence design by deep learning
J Wang
Nature Computational Science 2 (7), 416-417, 2022
72022
Variation in the modality of a yeast signaling pathway is mediated by a single regulator
J Palme, J Wang, M Springer
Elife 10, e69974, 2021
42021
Giving E. coli a newfound appetite for formate
ME Lidstrom, J Wang
Nature Metabolism 2 (3), 219-220, 2020
12020
Protein Design Using Structure-Prediction Networks: AlphaFold and RoseTTAFold as Protein Structure Foundation Models
J Wang, JL Watson, SL Lisanza
Cold Spring Harbor Perspectives in Biology, a041472, 2024
2024
Accurate single domain scaffolding of three non-overlapping protein epitopes using deep learning
KM Castro, JL Watson, J Wang, J Southern, R Ayardulabi, S Georgeon, ...
bioRxiv, 2024.05. 07.592871, 2024
2024
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