| m6A mRNA methylation controls T cell homeostasis by targeting the IL-7/STAT5/SOCS pathways HB Li, J Tong, S Zhu, PJ Batista, EE Duffy, J Zhao, W Bailis, G Cao, ... Nature 548 (7667), 338-342, 2017 | 837 | 2017 |
| TimeLapse-seq: adding a temporal dimension to RNA sequencing through nucleoside recoding JA Schofield, EE Duffy, L Kiefer, MC Sullivan, MD Simon Nature methods 15 (3), 221-225, 2018 | 244 | 2018 |
| Tracking distinct RNA populations using efficient and reversible covalent chemistry EE Duffy, M Rutenberg-Schoenberg, CD Stark, RR Kitchen, MB Gerstein, ... Molecular cell 59 (5), 858-866, 2015 | 220 | 2015 |
| Antisense lncRNA transcription mediates DNA demethylation to drive stochastic protocadherin α promoter choice D Canzio, CL Nwakeze, A Horta, SM Rajkumar, EL Coffey, EE Duffy, ... Cell 177 (3), 639-653. e15, 2019 | 147 | 2019 |
| Maternal immune activation in mice disrupts proteostasis in the fetal brain BT Kalish, E Kim, B Finander, EE Duffy, H Kim, CK Gilman, YS Yim, ... Nature neuroscience 24 (2), 204-213, 2021 | 117 | 2021 |
| A NPAS4–NuA4 complex couples synaptic activity to DNA repair EA Pollina, DT Gilliam, AT Landau, C Lin, N Pajarillo, CP Davis, ... Nature 614 (7949), 732-741, 2023 | 68 | 2023 |
| Developmental dynamics of RNA translation in the human brain EE Duffy, B Finander, GH Choi, AC Carter, I Pritisanac, A Alam, V Luria, ... Nature neuroscience 25 (10), 1353-1365, 2022 | 57 | 2022 |
| Gaining insight into transcriptome‐wide RNA population dynamics through the chemistry of 4‐thiouridine EE Duffy, JA Schofield, MD Simon Wiley Interdisciplinary Reviews: RNA 10 (1), e1513, 2019 | 51 | 2019 |
| Enriching s4U‐RNA Using Methane Thiosulfonate (MTS) Chemistry EE Duffy, MD Simon Current protocols in chemical biology 8 (4), 234-250, 2016 | 45 | 2016 |
| Solid phase chemistry to covalently and reversibly capture thiolated RNA EE Duffy, D Canzio, T Maniatis, MD Simon Nucleic acids research 46 (14), 6996-7005, 2018 | 25 | 2018 |
| Antisense lncRNA transcription drives stochastic Protocadherin α promoter choice D Canzio, CL Nwakeze, A Horta, SM Rajkumar, EL Coffey, EE Duffy, ... bioRxiv, 360206, 2018 | 2 | 2018 |
| Protocol for TimeLapse-seq M Simon, J Schofield, E Duffy, L Kiefer, M Sullivan | | 2018 |
