| Pathway Commons, a web resource for biological pathway data EG Cerami, BE Gross, E Demir, I Rodchenkov, Ö Babur, N Anwar, ... Nucleic acids research 39 (suppl_1), D685-D690, 2010 | 1270 | 2010 |
| Integrative analysis identifies four molecular and clinical subsets in uveal melanoma AG Robertson, J Shih, C Yau, EA Gibb, J Oba, KL Mungall, JM Hess, ... Cancer cell 32 (2), 204-220. e15, 2017 | 830 | 2017 |
| The BioPAX community standard for pathway data sharing E Demir, MP Cary, S Paley, K Fukuda, C Lemer, I Vastrik, G Wu, ... Nature biotechnology 28 (9), 935-942, 2010 | 780 | 2010 |
| Integrated analysis of TP53 gene and pathway alterations in the cancer genome atlas LA Donehower, T Soussi, A Korkut, Y Liu, A Schultz, M Cardenas, X Li, ... Cell reports 28 (5), 1370-1384. e5, 2019 | 532 | 2019 |
| The human tumor atlas network: charting tumor transitions across space and time at single-cell resolution O Rozenblatt-Rosen, A Regev, P Oberdoerffer, T Nawy, A Hupalowska, ... Cell 181 (2), 236-249, 2020 | 393 | 2020 |
| Pathway Commons 2019 Update: integration, analysis and exploration of pathway data I Rodchenkov, O Babur, A Luna, BA Aksoy, JV Wong, D Fong, M Franz, ... Nucleic acids research 48 (D1), D489-D497, 2020 | 272 | 2020 |
| Patika: an integrated visual environment for collaborative construction and analysis of cellular pathways E Demir, O Babur, U Dogrusoz, A Gursoy, G Nisanci, R Cetin-Atalay, ... Bioinformatics 18 (7), 996-1003, 2002 | 214 | 2002 |
| A proteogenomic portrait of lung squamous cell carcinoma S Satpathy, K Krug, PMJ Beltran, SR Savage, F Petralia, C Kumar-Sinha, ... Cell 184 (16), 4348-4371. e40, 2021 | 203 | 2021 |
| Systematic identification of cancer driving signaling pathways based on mutual exclusivity of genomic alterations Ö Babur, M Gönen, BA Aksoy, N Schultz, G Ciriello, C Sander, E Demir Genome biology 16, 1-10, 2015 | 173 | 2015 |
| Perturbation biology nominates upstream–downstream drug combinations in RAF inhibitor resistant melanoma cells A Korkut, W Wang, E Demir, BA Aksoy, X Jing, EJ Molinelli, Ö Babur, ... Elife 4, e04640, 2015 | 119 | 2015 |
| Large-scale automated machine reading discovers new cancer-driving mechanisms MA Valenzuela-Escárcega, Ö Babur, G Hahn-Powell, D Bell, T Hicks, ... Database 2018, bay098, 2018 | 96 | 2018 |
| COVID19 Disease Map, a computational knowledge repository of virus–host interaction mechanisms M Ostaszewski, A Niarakis, A Mazein, I Kuperstein, R Phair, ... Molecular systems biology 17 (10), e10387, 2021 | 82 | 2021 |
| An ontology for collaborative construction and analysis of cellular pathways E Demir, O Babur, U Dogrusoz, A Gursoy, A Ayaz, G Gulesir, G Nisanci, ... Bioinformatics 20 (3), 349-356, 2004 | 81 | 2004 |
| The AML microenvironment catalyzes a stepwise evolution to gilteritinib resistance SK Joshi, T Nechiporuk, D Bottomly, PD Piehowski, JA Reisz, ... Cancer cell 39 (7), 999-1014. e8, 2021 | 78 | 2021 |
| Patikaweb: a Web interface for analyzing biological pathways through advanced querying and visualization U Dogrusoz, EZ Erson, E Giral, E Demir, O Babur, A Cetintas, R Colak Bioinformatics 22 (3), 374-375, 2006 | 75 | 2006 |
| Using biological pathway data with paxtools E Demir, Ö Babur, I Rodchenkov, BA Aksoy, KI Fukuda, B Gross, ... PLoS computational biology 9 (9), e1003194, 2013 | 72 | 2013 |
| Phosphoproteomic quantitation and causal analysis reveal pathways in GPVI/ITAM-mediated platelet activation programs Ö Babur, AR Melrose, JM Cunliffe, J Klimek, J Pang, ALI Sepp, ... Blood, The Journal of the American Society of Hematology 136 (20), 2346-2358, 2020 | 71 | 2020 |
| Causal interactions from proteomic profiles: Molecular data meet pathway knowledge Ö Babur, A Luna, A Korkut, F Durupinar, MC Siper, U Dogrusoz, ... Patterns 2 (6), 2021 | 62 | 2021 |
| ChiBE: interactive visualization and manipulation of BioPAX pathway models O Babur, U Dogrusoz, E Demir, C Sander Bioinformatics 26 (3), 429-431, 2010 | 62 | 2010 |
| PathwayMapper: a collaborative visual web editor for cancer pathways and genomic data I Bahceci, U Dogrusoz, KC La, Ö Babur, J Gao, N Schultz Bioinformatics 33 (14), 2238-2240, 2017 | 52 | 2017 |
Emek DemirOHSU在 ohsu.edu 的电子邮件经过验证
