| Genetic determinants of in vivo fitness and diet responsiveness in multiple human gut Bacteroides M Wu, NP McNulty, DA Rodionov, MS Khoroshkin, NW Griffin, J Cheng, ... Science 350 (6256), aac5992, 2015 | 238 | 2015 |
| Micronutrient requirements and sharing capabilities of the human gut microbiome DA Rodionov, AA Arzamasov, MS Khoroshkin, SN Iablokov, SA Leyn, ... Frontiers in microbiology 10, 1316, 2019 | 132 | 2019 |
| Comparative genomics and evolution of regulons of the LacI-family transcription factors DA Ravcheev, MS Khoroshkin, ON Laikova, OV Tsoy, NV Sernova, ... Frontiers in microbiology 5, 294, 2014 | 86 | 2014 |
| Transcriptional Regulation of Carbohydrate Utilization Pathways in the Bifidobacterium Genus MS Khoroshkin, SA Leyn, D Van Sinderen, DA Rodionov Frontiers in microbiology 7, 120, 2016 | 61 | 2016 |
| A prometastatic splicing program regulated by SNRPA1 interactions with structured RNA elements L Fish, M Khoroshkin, A Navickas, K Garcia, B Culbertson, B Hänisch, ... Science 372 (6543), eabc7531, 2021 | 45 | 2021 |
| Extending chemical perturbations of the ubiquitin fitness landscape in a classroom setting reveals new constraints on sequence tolerance D Mavor, KA Barlow, D Asarnow, Y Birman, D Britain, W Chen, EM Green, ... Biology Open 7 (7), bio036103, 2018 | 20 | 2018 |
| hPSC-derived enteric ganglioids model human ENS development and function H Majd, RM Samuel, JT Ramirez, A Kalantari, K Barber, Z Ghazizadeh, ... BioRxiv, 2022.01. 04.474746, 2022 | 6 | 2022 |
| A systematic search for RNA structural switches across the human transcriptome M Khoroshkin, D Asarnow, S Zhou, A Navickas, A Winters, J Goudreau, ... Nature Methods, 1-12, 2024 | 3 | 2024 |
| Syntrophic metabolism of vitamins and amino acids in gut microbial community as revealed by in silico genomic analyses MS Khoroshkin, D Rodionov The FASEB Journal 30, 819.5-819.5, 2016 | 3 | 2016 |
| Gene networks reveal stem-cell state convergence during preneoplasia and progression to malignancy in multistage skin carcinogenesis MA Taylor, E Kandyba, K Halliwill, R Delrosario, M Koroshkin, H Goodarzi, ... bioRxiv, 2023 | 2 | 2023 |
| Stem-cell states converge in multistage cutaneous squamous cell carcinoma development MA Taylor, E Kandyba, K Halliwill, R Delrosario, M Khoroshkin, ... Science 384 (6699), eadi7453, 2024 | 1 | 2024 |
| Systematic Identification of Post-Transcriptional Regulatory Modules M Khoroshkin, A Buyan, M Dodel, A Navickas, J Yu, F Trejo, A Doty, ... bioRxiv, 2023.02. 27.530345, 2023 | | 2023 |
| Addressing biases in gene-set enrichment analysis: a case study of Alzheimer's Disease A Bakulin, NB Teyssier, M Kampmann, M Khoroshkin, H Goodarzi bioRxiv, 2023.08. 13.553133, 2023 | | 2023 |
| Control of Gene Expression by RNA Binding Proteins and RNA Secondary Structure Elements M Khoroshkin University of California, San Francisco, 2022 | | 2022 |
| Phenobiome approach enabling genomics-based prediction and comparative analysis of metabolic phenotypes in human gut microbiome GA Ashniev, SN Iablokov, AA Arzamasov, MS Khoroshkin, PS Novichkov, ... ИТиС 2018, 562-563, 2018 | | 2018 |
| Metabolic exchange by essential vitamins in the human intestinal microbiota A Arzamasov, M Khoroshkin, S Leyn, D Rodionov Moscow Conference on Computational Molecular Biology (MCCMB 2017), 145-145, 2017 | | 2017 |
