| SARS-CoV-2 receptor ACE2 is an interferon-stimulated gene in human airway epithelial cells and is detected in specific cell subsets across tissues CGK Ziegler, SJ Allon, SK Nyquist, IM Mbano, VN Miao, CN Tzouanas, ... Cell 181 (5), 1016-1035. e19, 2020 | 2379 | 2020 |
| De novo assembly of the Aedes aegypti genome using Hi-C yields chromosome-length scaffolds O Dudchenko, SS Batra, AD Omer, SK Nyquist, M Hoeger, NC Durand, ... Science 356 (6333), 92-95, 2017 | 1691 | 2017 |
| Allergic inflammatory memory in human respiratory epithelial progenitor cells J Ordovas-Montanes, DF Dwyer, SK Nyquist, KM Buchheit, M Vukovic, ... Nature 560 (7720), 649-654, 2018 | 447 | 2018 |
| Single-cell meta-analysis of SARS-CoV-2 entry genes across tissues and demographics C Muus, MD Luecken, G Eraslan, L Sikkema, A Waghray, G Heimberg, ... Nature medicine 27 (3), 546-559, 2021 | 306 | 2021 |
| Integrated analyses of single-cell atlases reveal age, gender, and smoking status associations with cell type-specific expression of mediators of SARS-CoV-2 viral entry and … C Muus, MD Luecken, G Eraslan, A Waghray, G Heimberg, L Sikkema, ... BioRxiv, 2020.04. 19.049254, 2020 | 257 | 2020 |
| The Juicebox Assembly Tools module facilitates de novo assembly of mammalian genomes with chromosome-length scaffolds for under $1000 O Dudchenko, MS Shamim, SS Batra, NC Durand, NT Musial, R Mostofa, ... BioRxiv, 254797, 2018 | 243 | 2018 |
| Integrated single-cell analysis of multicellular immune dynamics during hyperacute HIV-1 infection SW Kazer, TP Aicher, DM Muema, SL Carroll, J Ordovas-Montanes, ... Nature medicine 26 (4), 511-518, 2020 | 123 | 2020 |
| Multimodal profiling of lung granulomas in macaques reveals cellular correlates of tuberculosis control HP Gideon, TK Hughes, CN Tzouanas, MH Wadsworth, AA Tu, ... Immunity 55 (5), 827-846. e10, 2022 | 109 | 2022 |
| Human airway mast cells proliferate and acquire distinct inflammation-driven phenotypes during type 2 inflammation DF Dwyer, J Ordovas-Montanes, SJ Allon, KM Buchheit, M Vukovic, ... Science immunology 6 (56), eabb7221, 2021 | 107 | 2021 |
| Computational methods for single-cell RNA sequencing B Hie, J Peters, SK Nyquist, AK Shalek, B Berger, BD Bryson Annual Review of Biomedical Data Science 3, 339-364, 2020 | 97 | 2020 |
| HCA Lung Biological Network. SARS-CoV-2 receptor ACE2 is an interferon-stimulated gene in human airway epithelial cells and is detected in specific cell subsets across tissues CGK Ziegler, SJ Allon, SK Nyquist, IM Mbano, VN Miao, CN Tzouanas, ... Cell 181 (5), 1016-1035, 2020 | 67 | 2020 |
| Cellular and transcriptional diversity over the course of human lactation SK Nyquist, P Gao, TKJ Haining, MR Retchin, Y Golan, RS Drake, K Kolb, ... Proceedings of the National Academy of Sciences 119 (15), e2121720119, 2022 | 25 | 2022 |
| Improved haplotype inference by exploiting long-range linking and allelic imbalance in RNA-seq datasets E Berger, D Yorukoglu, L Zhang, SK Nyquist, AK Shalek, M Kellis, ... Nature communications 11 (1), 4662, 2020 | 20 | 2020 |
| CD8+ lymphocytes are critical for early control of tuberculosis in macaques CG Winchell, SK Nyquist, MC Chao, P Maiello, AJ Myers, F Hopkins, ... Journal of Experimental Medicine 220 (12), e20230707, 2023 | 15 | 2023 |
| HIV infection drives interferon signaling within intestinal SARS-CoV-2 target cells R Fardoos, OE Asowata, N Herbert, SK Nyquist, Y Zungu, A Singh, ... JCI insight 6 (16), 2021 | 8 | 2021 |
| HIV specific CD8+ TRM-like cells in tonsils express exhaustive signatures in the absence of natural HIV control R Fardoos, SK Nyquist, OE Asowata, SW Kazer, A Singh, A Ngoepe, ... Frontiers in Immunology 13, 912038, 2022 | 7 | 2022 |
| Hi-C yields chromosome-length scaffolds for a legume genome, Trifolium subterraneum O Dudchenko, M Pham, C Lui, SS Batra, M Hoeger, SK Nyquist, ... bioRxiv, 473553, 2018 | 7 | 2018 |
| Protective intravenous BCG vaccination induces enhanced immune signaling in the airways JM Peters, EB Irvine, JM Rosenberg, MH Wadsworth, TK Hughes, ... bioRxiv, 2023.07. 16.549208, 2023 | 4 | 2023 |
| Identification and characterization of the T cell receptor (TCR) repertoire of the cynomolgus macaque (Macaca Fascicularis) S Jaiswal, SK Nyquist, S Boyce, T Jivanjee, S Ibrahim, JD Bromley, ... BMC genomics 23 (1), 647, 2022 | 3 | 2022 |
| Reduced cellular diversity and an altered basal progenitor cell state inform epithelial barrier dysfunction in human type 2 immunity J Ordovas-Montanes, DF Dwyer, SK Nyquist, KM Buchheit, C Deb, ... bioRxiv, 218958, 2017 | 3 | 2017 |
