| The bee microbiome: impact on bee health and model for evolution and ecology of host-microbe interactions P Engel, WK Kwong, Q McFrederick, KE Anderson, SM Barribeau, ... MBio 7 (2), 10.1128/mbio. 02164-15, 2016 | 276* | 2016 |
| Global analysis of biosynthetic gene clusters reveals vast potential of secondary metabolite production in Penicillium species JC Nielsen, S Grijseels, S Prigent, B Ji, J Dainat, KF Nielsen, JC Frisvad, ... Nature microbiology 2 (6), 1-9, 2017 | 264 | 2017 |
| The genetic basis for ecological adaptation of the Atlantic herring revealed by genome sequencing A Martinez Barrio, S Lamichhaney, G Fan, N Rafati, M Pettersson, ... elife 5, e12081, 2016 | 187 | 2016 |
| AGAT: Another Gff Analysis Toolkit to handle annotations in any GTF/GFF format J Dainat https://github.com/NBISweden/AGAT, 2019 | 159* | 2019 |
| TEsorter: an accurate and fast method to classify LTR-retrotransposons in plant genomes RG Zhang, GY Li, XL Wang, J Dainat, ZX Wang, S Ou, Y Ma Horticulture Research 9, uhac017, 2022 | 96 | 2022 |
| Pervasive hybridizations in the history of wheat relatives S Glémin, C Scornavacca, J Dainat, C Burgarella, V Viader, M Ardisson, ... Science advances 5 (5), eaav9188, 2019 | 93 | 2019 |
| The genomic footprint of sexual conflict A Sayadi, A Martinez Barrio, E Immonen, J Dainat, D Berger, ... Nature ecology & evolution 3 (12), 1725-1730, 2019 | 69 | 2019 |
| Integration of evolutionary biology concepts for functional annotation and automation of complex research in evolution: the multi-agent software system DAGOBAH P Gouret, J Paganini, J Dainat, D Louati, E Darbo, P Pontarotti, ... Evolutionary biology–concepts, biodiversity, macroevolution and genome …, 2011 | 62 | 2011 |
| Genome assembly of the basket willow, Salix viminalis, reveals earliest stages of sex chromosome expansion P Almeida, E Proux-Wera, A Churcher, L Soler, J Dainat, P Pucholt, ... BMC biology 18, 1-18, 2020 | 54 | 2020 |
| Genomic analyses of the Linum distyly supergene reveal convergent evolution at the molecular level J Gutiérrez-Valencia, M Fracassetti, EL Berdan, I Bunikis, L Soler, ... Current Biology 32 (20), 4360-4371. e6, 2022 | 30 | 2022 |
| Impact of recurrent gene duplication on adaptation of plant genomes I Fischer, J Dainat, V Ranwez, S Glémin, JF Dufayard, N Chantret BMC Plant Biology 14, 1-15, 2014 | 30 | 2014 |
| EMBLmyGFF3: a converter facilitating genome annotation submission to European Nucleotide Archive M Norling, N Jareborg, J Dainat BMC Research Notes 11, 1-5, 2018 | 26 | 2018 |
| Complete Genome sequences of the xylose-fermenting candida intermedia strains CBS 141442 and PYCC 4715 AD Moreno, C Tellgren-Roth, L Soler, J Dainat, L Olsson, C Geijer Genome announcements 5 (14), 10.1128/genomea. 00138-17, 2017 | 13 | 2017 |
| Chromosomal genome assembly of the ethanol production strain CBS 11270 indicates a highly dynamic genome structure in the yeast species Brettanomyces bruxellensis IA Tiukova, ME Pettersson, MP Hoeppner, RA Olsen, M Käller, J Nielsen, ... PLoS One 14 (5), e0215077, 2019 | 12 | 2019 |
| GLADX: an automated approach to analyze the lineage-specific loss and pseudogenization of genes J Dainat, J Paganini, P Pontarotti, P Gouret PloS one 7 (6), e38792, 2012 | 12 | 2012 |
| Single-molecule genome assembly of the Basket Willow, Salix viminalis, reveals earliest stages of sex chromosome expansion P Almeida, E Proux-Wera, A Churcher, L Soler, J Dainat, P Pucholt, ... bioRxiv, 589804, 2019 | 9 | 2019 |
| A universal genomic coordinate translator for comparative genomics N Zamani, G Sundström, JRS Meadows, MP Höppner, J Dainat, H Lantz, ... BMC bioinformatics 15, 1-13, 2014 | 9 | 2014 |
| Assembly and Analysis of the Genome Sequence of the Yeast Brettanomyces naardenensis CBS 7540 IA Tiukova, H Jiang, J Dainat, MP Hoeppner, H Lantz, J Piskur, ... Microorganisms 7 (11), 489, 2019 | 7 | 2019 |
| The chordate proteome history database A Levasseur, J Paganini, J Dainat, JD Thompson, O Poch, P Pontarotti, ... Evolutionary Bioinformatics 8, EBO. S9186, 2012 | 6 | 2012 |
| Genome assemblies of three closely related leaf beetle species (Galerucella spp.) X Yang, T Slotte, J Dainat, PA Hambäck G3 11 (8), jkab214, 2021 | 3 | 2021 |
