| Critical steps in clinical shotgun metagenomics for the concomitant detection and typing of microbial pathogens N Couto, L Schuele, EC Raangs, MP Machado, CI Mendes, TF Jesus, ... Scientific reports 8 (1), 13767, 2018 | 75 | 2018 |
| Genomic characterisation of clinical and environmental Pseudomonas putida group strains and determination of their role in the transfer of antimicrobial resistance genes to … S Peter, P Oberhettinger, L Schuele, A Dinkelacker, W Vogel, D Dörfel, ... BMC genomics 18, 1-11, 2017 | 65 | 2017 |
| Ongoing mpox outbreak in Kamituga, South Kivu province, associated with monkeypox virus of a novel Clade I sub-lineage, Democratic Republic of the Congo, 2024 LM Masirika, JC Udahemuka, L Schuele, P Ndishimye, S Otani, ... Eurosurveillance 29 (11), 2400106, 2024 | 56 | 2024 |
| Development of a quantitative high-performance thin-layer chromatographic method for sucralose in sewage effluent, surface water, and drinking water GE Morlock, L Schuele, S Grashorn Journal of Chromatography A 1218 (19), 2745-2753, 2011 | 56 | 2011 |
| Expansion of Vancomycin-Resistant Enterococcus faecium in an Academic Tertiary Hospital in Southwest Germany: a Large-Scale Whole-Genome-Based … J Liese, L Schüle, P Oberhettinger, L Tschörner, T Nguyen, D Dörfel, ... Antimicrobial agents and chemotherapy 63 (5), 10.1128/aac. 01978-18, 2019 | 50 | 2019 |
| Future potential of metagenomics in microbiology laboratories L Schuele, H Cassidy, N Peker, JWA Rossen, N Couto Expert review of molecular diagnostics 21 (12), 1273-1285, 2021 | 23 | 2021 |
| Assessment of viral targeted sequence capture using nanopore sequencing directly from clinical samples L Schuele, H Cassidy, E Lizarazo, K Strutzberg-Minder, S Schuetze, ... Viruses 12 (12), 1358, 2020 | 21 | 2020 |
| Description of Citrobacter cronae sp. nov., isolated from human rectal swabs and stool samples P Oberhettinger, L Schüle, M Marschal, D Bezdan, S Ossowski, D Dörfel, ... International journal of systematic and evolutionary microbiology 70 (5 …, 2020 | 19 | 2020 |
| Evaluation of whole-genome sequence data analysis approaches for short- and long-read sequencing of Mycobacterium tuberculosis N Peker, L Schuele, N Kok, M Terrazos, SM Neuenschwander, J de Beer, ... Microbial genomics 7 (11), 000695, 2021 | 18 | 2021 |
| First detection of porcine respirovirus 1 in Germany and the Netherlands L Schuele, E Lizarazo‐Forero, H Cassidy, K Strutzberg‐Minder, ... Transboundary and emerging diseases 68 (6), 3120-3125, 2021 | 17 | 2021 |
| Mpox outbreak among men who have sex with men in Amsterdam and Rotterdam, the Netherlands: no evidence for undetected transmission prior to May 2022, a retrospective study HJ de Vries, HM Götz, S Bruisten, AA van der Eijk, M Prins, BBO Munnink, ... Eurosurveillance 28 (17), 2200869, 2023 | 15 | 2023 |
| Detection of a novel mcr-5.4 gene variant in hospital tap water by shotgun metagenomic sequencing G Fleres, N Couto, L Schuele, MA Chlebowicz, CI Mendes, ... Journal of Antimicrobial Chemotherapy 74 (12), 3626-3628, 2019 | 14 | 2019 |
| Real-time PCR assay to detect the novel Clade Ib monkeypox virus, September 2023 to May 2024 L Schuele, LM Masirika, JC Udahemuka, FB Siangoli, JB Mbiribindi, ... Eurosurveillance 29 (32), 2400486, 2024 | 12 | 2024 |
| Mapping the distribution and describing the first cases from an ongoing outbreak of a New Strain of mpox in South Kivu, Eastern Democratic Republic of Congo between September … LM Masirika, DF Nieuwenhuijse, P Ndishimye, JC Udahemuka, ... medRxiv, 2024 | 11 | 2024 |
| Circulation, viral diversity and genomic rearrangement in mpox virus in the Netherlands during the 2022 outbreak and beyond L Schuele, M Boter, DF Nieuwenhuijse, H Götz, E Fanoy, H de Vries, ... Journal of Medical Virology 96 (1), e29397, 2024 | 8 | 2024 |
| Characterization of mobile genetic elements in multidrug-resistant Bacteroides fragilis isolates from different hospitals in the Netherlands KE Boiten, EJ Kuijper, L Schuele, J van Prehn, LGM Bode, I Maat, ... Anaerobe 81, 102722, 2023 | 7 | 2023 |
| Application of shotgun metagenomics sequencing and targeted sequence capture to detect circulating porcine viruses in the Dutch–German border region L Schuele, E Lizarazo‐Forero, K Strutzberg‐Minder, S Schütze, S Löbert, ... Transboundary and emerging diseases 69 (4), 2306-2319, 2022 | 7 | 2022 |
| Host DNA depletion can increase the sensitivity of Mycobacterium spp. detection through shotgun metagenomics in sputum NA Kok, N Peker, L Schuele, JL de Beer, JWA Rossen, B Sinha, N Couto Frontiers in microbiology 13, 949328, 2022 | 6 | 2022 |
| Critical steps in clinical shotgun metagenomics for the concomitant detection and typing of microbial pathogens. Sci Rep 8: 13767 N Couto, L Schuele, EC Raangs, MP Machado, CI Mendes, TF Jesus, ... | 6 | 2018 |
| Off-season circulation and characterization of enterovirus D68 with respiratory and neurological presentation using whole-genome sequencing H Cassidy, E Lizarazo-Forero, L Schuele, V Leer-Buter, HGM Niesters Frontiers in Microbiology 13, 1088770, 2023 | 4 | 2023 |
