| New virologic tools for management of chronic hepatitis B and C S Chevaliez, C Rodriguez, JM Pawlotsky Gastroenterology 142 (6), 1303-1313. e1, 2012 | 175 | 2012 |
| Machine learning in the clinical microbiology laboratory: has the time come for routine practice? N Peiffer-Smadja, S Dellière, C Rodriguez, G Birgand, FX Lescure, ... Clinical Microbiology and Infection 26 (10), 1300-1309, 2020 | 100 | 2020 |
| Frequent antiviral treatment failures in patients infected with hepatitis C virus genotype 4, subtype 4r S Fourati, C Rodriguez, C Hézode, A Soulier, I Ruiz, L Poiteau, ... Hepatology 69 (2), 513-523, 2019 | 95 | 2019 |
| Early assessment of diffusion and possible expansion of SARS-CoV-2 Lineage 20I/501Y. V1 (B. 1.1. 7, variant of concern 202012/01) in France, January to March 2021 A Gaymard, P Bosetti, A Feri, G Destras, V Enouf, A Andronico, S Burrel, ... Eurosurveillance 26 (9), 2100133, 2021 | 81 | 2021 |
| Characterization of the dynamics of hepatitis B virus resistance to adefovir by ultra‐deep pyrosequencing C Rodriguez, S Chevaliez, P Bensadoun, JM Pawlotsky Hepatology 58 (3), 890-901, 2013 | 67 | 2013 |
| Recommendations for the introduction of metagenomic high-throughput sequencing in clinical virology, part I: Wet lab procedure FX López-Labrador, JR Brown, N Fischer, H Harvala, S Van Boheemen, ... Journal of Clinical Virology 134, 104691, 2021 | 64 | 2021 |
| Impact and consequences of intensive chemotherapy on intestinal barrier and microbiota in acute myeloid leukemia: the role of mucosal strengthening T Hueso, K Ekpe, C Mayeur, A Gatse, M Joncquel-Chevallier Curt, ... Gut microbes 12 (1), 1800897, 2020 | 52 | 2020 |
| Economic burden of preemptive treatment of CMV infection after allogeneic stem cell transplantation: a retrospective study of 208 consecutive patients C Robin, F Hémery, C Dindorf, J Thillard, L Cabanne, R Redjoul, ... BMC infectious diseases 17, 1-8, 2017 | 52 | 2017 |
| Clinical phenotypes and outcomes associated with SARS-CoV-2 variant Omicron in critically ill French patients with COVID-19 N De Prost, E Audureau, N Heming, E Gault, T Pham, A Chaghouri, ... nature communications 13 (1), 6025, 2022 | 47 | 2022 |
| The Cobas AmpliPrep/Cobas TaqMan HCV test, version 2.0, real-time PCR assay accurately quantifies hepatitis C virus genotype 4 RNA S Chevaliez, M Bouvier-Alias, C Rodriguez, A Soulier, JD Poveda, ... Journal of Clinical Microbiology 51 (4), 1078-1082, 2013 | 46 | 2013 |
| Complex dynamics of hepatitis B virus resistance to adefovir C Pallier, C Rodriguez, R Brillet, P Nordmann, C Hézode, JM Pawlotsky Hepatology 49 (1), 50-59, 2009 | 46 | 2009 |
| BNT162b2 mRNA vaccination did not prevent an outbreak of SARS COV-2 variant 501Y. V2 in an elderly nursing home but reduced transmission and disease severity B Bailly, L Guilpain, K Bouiller, C Chirouze, M N’Debi, A Soulier, ... Clin Infect Dis 16 (3), 517-520, 2021 | 41 | 2021 |
| Pathogen identification by shotgun metagenomics of patients with necrotizing soft‐tissue infections C Rodriguez, A Jary, C Hua, PL Woerther, R Bosc, M Desroches, ... British Journal of Dermatology 183 (1), 105-113, 2020 | 41 | 2020 |
| Characterization of biliary microbiota dysbiosis in extrahepatic cholangiocarcinoma M Saab, D Mestivier, M Sohrabi, C Rodriguez, MR Khonsari, A Faraji, ... PLoS One 16 (3), e0247798, 2021 | 40 | 2021 |
| Benchmark of thirteen bioinformatic pipelines for metagenomic virus diagnostics using datasets from clinical samples JJC de Vries, JR Brown, N Fischer, IA Sidorov, S Morfopoulou, J Huang, ... Journal of Clinical Virology 141, 104908, 2021 | 39 | 2021 |
| Viral genomic, metagenomic and human transcriptomic characterization and prediction of the clinical forms of COVID-19 C Rodriguez, N de Prost, S Fourati, C Lamoureux, G Gricourt, M N’debi, ... PLoS Pathogens 17 (3), e1009416, 2021 | 38 | 2021 |
| The potential role of clinical metagenomics in infectious diseases: therapeutic perspectives C d’Humières, M Salmona, S Dellière, S Leo, C Rodriguez, C Angebault, ... Drugs 81 (13), 1453-1466, 2021 | 35 | 2021 |
| Fine-scale structure analysis shows epidemic patterns of clonal complex 95, a cosmopolitan Escherichia coli lineage responsible for extraintestinal infection DM Gordon, S Geyik, O Clermont, CL O’Brien, S Huang, C Abayasekara, ... Msphere 2 (3), 10.1128/msphere. 00168-17, 2017 | 32 | 2017 |
| Highly frequent HIV-1 minority resistant variants at baseline of the ANRS 139 TRIO trial had a limited impact on virological response C Charpentier, GQ Lee, C Rodriguez, B Visseaux, A Storto, C Fagard, ... Journal of Antimicrobial Chemotherapy 70 (7), 2090-2096, 2015 | 28 | 2015 |
| Molecular characterization of HCV resistance to telaprevir by means of ultra-deep pyrosequencing: preexisting resistant variants and dynamics of resistant populations S Chevaliez, C Rodriguez, A Soulier, A Ahmed-Belkacem, C Hezode, ... J Hepatol 54 (Suppl 1), S30, 2011 | 28 | 2011 |
