| Cellular conditions of weakly chelated magnesium ions strongly promote RNA stability and catalysis R Yamagami, JL Bingaman, EA Frankel, PC Bevilacqua Nature communications 9 (1), 2149, 2018 | 78 | 2018 |
| Functional roles of chelated magnesium ions in RNA folding and function R Yamagami, JP Sieg, PC Bevilacqua Biochemistry 60 (31), 2374-2386, 2021 | 47 | 2021 |
| The tRNA recognition mechanism of folate/FAD-dependent tRNA methyltransferase (TrmFO) R Yamagami, K Yamashita, H Nishimasu, C Tomikawa, A Ochi, ... Journal of Biological Chemistry 287 (51), 42480-42494, 2012 | 47 | 2012 |
| Transfer RNA modification enzymes from thermophiles and their modified nucleosides in tRNA H Hori, T Kawamura, T Awai, A Ochi, R Yamagami, C Tomikawa, A Hirata Microorganisms 6 (4), 110, 2018 | 45 | 2018 |
| Genome-wide analysis of the in vivo tRNA structurome reveals RNA structural and modification dynamics under heat stress R Yamagami, JP Sieg, SM Assmann, PC Bevilacqua Proceedings of the National Academy of Sciences 119 (25), e2201237119, 2022 | 43 | 2022 |
| The catalytic domain of topological knot tRNA methyltransferase (TrmH) discriminates between substrate tRNA and nonsubstrate tRNA via an induced-fit process A Ochi, K Makabe, R Yamagami, A Hirata, R Sakaguchi, YM Hou, ... Journal of Biological Chemistry 288 (35), 25562-25574, 2013 | 38 | 2013 |
| Cellular concentrations of nucleotide diphosphate-chelated magnesium ions accelerate catalysis by RNA and DNA enzymes R Yamagami, R Huang, PC Bevilacqua Biochemistry 58 (38), 3971-3979, 2019 | 27 | 2019 |
| In vitro dihydrouridine formation by tRNA dihydrouridine synthase from Thermus thermophilus , an extreme-thermophilic eubacterium H Kusuba, T Yoshida, E Iwasaki, T Awai, A Kazayama, A Hirata, ... The journal of biochemistry 158 (6), 513-521, 2015 | 26 | 2015 |
| Folate‐/FAD‐dependent tRNA methyltransferase from Thermus thermophilus regulates other modifications in tRNA at low temperatures R Yamagami, C Tomikawa, N Shigi, A Kazayama, S Asai, H Takuma, ... Genes to Cells 21 (7), 740-754, 2016 | 25 | 2016 |
| X-ray structure of the fourth type of archaeal tRNA splicing endonuclease: insights into the evolution of a novel three-unit composition and a unique loop involved in broad … A Hirata, K Fujishima, R Yamagami, T Kawamura, JF Banfield, A Kanai, ... Nucleic acids research 40 (20), 10554-10566, 2012 | 24 | 2012 |
| Improved solid-phase DNA probe method for tRNA purification: large-scale preparation and alteration of DNA fixation A Kazayama, R Yamagami, T Yokogawa, H Hori The journal of biochemistry 157 (5), 411-418, 2015 | 19 | 2015 |
| Long and branched polyamines are required for maintenance of the ribosome, tRNAHis and tRNATyr in Thermus thermophilus cells at high temperatures M Nakashima, R Yamagami, C Tomikawa, Y Ochi, T Moriya, H Asahara, ... Genes to Cells 22 (7), 628-645, 2017 | 17 | 2017 |
| Single-nucleotide control of tRNA folding cooperativity under near-cellular conditions KA Leamy, R Yamagami, NH Yennawar, PC Bevilacqua Proceedings of the National Academy of Sciences 116 (46), 23075-23082, 2019 | 15 | 2019 |
| Design of highly active double-pseudoknotted ribozymes: a combined computational and experimental study R Yamagami, M Kayedkhordeh, DH Mathews, PC Bevilacqua Nucleic acids research 47 (1), 29-42, 2019 | 15 | 2019 |
| RNA folding studies inside peptide-rich droplets reveal roles of modified nucleosides at the origin of life MCO Meyer, R Yamagami, S Choi, CD Keating, PC Bevilacqua Science Advances 9 (38), eadh5152, 2023 | 10 | 2023 |
| Application of mutational profiling: New functional analyses reveal the tRNA recognition mechanism of tRNA m1A22 methyltransferase R Yamagami, H Hori Journal of Biological Chemistry 299 (1), 2023 | 9 | 2023 |
| Required Elements in tRNA for Methylation by the Eukaryotic tRNA (Guanine-N2-) Methyltransferase (Trm11-Trm112 Complex) Y Nishida, S Ohmori, R Kakizono, K Kawai, M Namba, K Okada, ... International Journal of Molecular Sciences 23 (7), 4046, 2022 | 7 | 2022 |
| Consumption of N5, N10-methylenetetrahydrofolate in Thermus thermophilus under nutrient-poor condition R Yamagami, R Miyake, A Fukumoto, M Nakashima, H Hori The journal of biochemistry 164 (2), 141-152, 2018 | 5 | 2018 |
| Regulation of Protein Synthesis via the Network Between Modified Nucleotides in tRNA and tRNA Modification Enzymes in Thermus thermophilus, a Thermophilic … H Hori, R Yamagami, C Tomikawa Modified Nucleic Acids in Biology and Medicine, 73-89, 2016 | 5 | 2016 |
| High-throughput mutational analysis of a methyltransferase ribozyme R Yamagami, H Kubota, E Kohno, H Hori Frontiers in RNA Research 2, 1415530, 2024 | 2 | 2024 |
Philip BevilacquaProfessor of Chemistry, The Pennsylvania State University在 psu.edu 的电子邮件经过验证
