Galaxy: a platform for interactive large-scale genome analysis B Giardine, C Riemer, RC Hardison, R Burhans, L Elnitski, P Shah, ... Genome research 15 (10), 1451-1455, 2005 | 2583 | 2005 |
In vivo genome-wide profiling of RNA secondary structure reveals novel regulatory features Y Ding, Y Tang, CK Kwok, Y Zhang, PC Bevilacqua, SM Assmann Nature 505 (7485), 696-700, 2014 | 824 | 2014 |
Bayesian inference of epistatic interactions in case-control studies Y Zhang, JS Liu Nature genetics 39 (9), 1167-1173, 2007 | 593 | 2007 |
Complete Khoisan and Bantu genomes from southern Africa SC Schuster, W Miller, A Ratan, LP Tomsho, B Giardine, LR Kasson, ... Nature 463 (7283), 943-947, 2010 | 532 | 2010 |
Genetic diversity and population structure of the endangered marsupial Sarcophilus harrisii (Tasmanian devil) W Miller, VM Hayes, A Ratan, DC Petersen, NE Wittekindt, J Miller, ... Proceedings of the National Academy of Sciences 108 (30), 12348-12353, 2011 | 269 | 2011 |
Dynamics of the epigenetic landscape during erythroid differentiation after GATA1 restoration W Wu, Y Cheng, CA Keller, J Ernst, SA Kumar, T Mishra, C Morrissey, ... Genome research 21 (10), 1659-1671, 2011 | 149 | 2011 |
The changing mouse embryo transcriptome at whole tissue and single-cell resolution P He, BA Williams, D Trout, GK Marinov, H Amrhein, L Berghella, ST Goh, ... Nature 583 (7818), 760-767, 2020 | 134 | 2020 |
Alignment of optical maps A Valouev, L Li, YC Liu, DC Schwartz, Y Yang, Y Zhang, MS Waterman Journal of Computational Biology 13 (2), 442-462, 2006 | 113 | 2006 |
Jointly characterizing epigenetic dynamics across multiple human cell types Y Zhang, L An, F Yue, RC Hardison Nucleic acids research 44 (14), 6721-6731, 2016 | 93 | 2016 |
PheWAS and beyond: the landscape of associations with medical diagnoses and clinical measures across 38,662 individuals from Geisinger A Verma, A Lucas, SS Verma, Y Zhang, N Josyula, A Khan, DN Hartzel, ... The American Journal of Human Genetics 102 (4), 592-608, 2018 | 76 | 2018 |
OnTAD: hierarchical domain structure reveals the divergence of activity among TADs and boundaries L An, T Yang, J Yang, J Nuebler, G Xiang, RC Hardison, Q Li, Y Zhang Genome biology 20, 1-16, 2019 | 71 | 2019 |
Calling SNPs without a reference sequence A Ratan, Y Zhang, VM Hayes, SC Schuster, W Miller BMC bioinformatics 11, 1-13, 2010 | 62 | 2010 |
Human-disease phenotype map derived from PheWAS across 38,682 individuals A Verma, L Bang, JE Miller, Y Zhang, MTM Lee, Y Zhang, ... The American Journal of Human Genetics 104 (1), 55-64, 2019 | 59 | 2019 |
A novel bayesian graphical model for genome‐wide multi‐SNP association mapping Y Zhang Genetic epidemiology 36 (1), 36-47, 2012 | 59 | 2012 |
Accurate and reproducible functional maps in 127 human cell types via 2D genome segmentation Y Zhang, RC Hardison Nucleic acids research 45 (17), 9823-9836, 2017 | 48 | 2017 |
An Eulerian path approach to global multiple alignment for DNA sequences Y Zhang, MS Waterman Journal of Computational Biology 10 (6), 803-819, 2003 | 47 | 2003 |
Refinement of optical map assemblies A Valouev, Y Zhang, DC Schwartz, MS Waterman Bioinformatics 22 (10), 1217-1224, 2006 | 43 | 2006 |
An Eulerian path approach to local multiple alignment for DNA sequences Y Zhang, MS Waterman Proceedings of the National Academy of Sciences 102 (5), 1285-1290, 2005 | 43 | 2005 |
An integrative view of the regulatory and transcriptional landscapes in mouse hematopoiesis G Xiang, CA Keller, E Heuston, BM Giardine, L An, AQ Wixom, A Miller, ... Genome research 30 (3), 472-484, 2020 | 38 | 2020 |
Block-based Bayesian epistasis association mapping with application to WTCCC type 1 diabetes data Y Zhang, J Zhang, JS Liu The annals of applied statistics 5 (3), 2052, 2011 | 36 | 2011 |