Clades of huge phages from across Earth’s ecosystems B Al-Shayeb, R Sachdeva, LX Chen, F Ward, P Munk, A Devoto, ... Nature 578 (7795), 425-431, 2020 | 411 | 2020 |
Genome-resolved metagenomics reveals site-specific diversity of episymbiotic CPR bacteria and DPANN archaea in groundwater ecosystems C He, R Keren, ML Whittaker, IF Farag, JA Doudna, JHD Cate, JF Banfield Nature microbiology 6 (3), 354-365, 2021 | 128 | 2021 |
In Silico Analysis of the Metabolic Potential and Niche Specialization of Candidate Phylum "Latescibacteria" (WS3) NH Youssef, IF Farag, C Rinke, SJ Hallam, T Woyke, MS Elshahed PloS one 10 (6), e0127499, 2015 | 113 | 2015 |
Global distribution patterns and pangenomic diversity of the candidate phylum “Latescibacteria”(WS3) IF Farag, NH Youssef, MS Elshahed Applied and Environmental Microbiology 83 (10), e00521-17, 2017 | 101 | 2017 |
Global patterns of abundance, diversity and community structure of the Aminicenantes (candidate phylum OP8) IF Farag, JP Davis, NH Youssef, MS Elshahed PloS one 9 (3), e92139, 2014 | 99 | 2014 |
Insights into the metabolism, lifestyle and putative evolutionary history of the novel archaeal phylum ‘Diapherotrites’ NH Youssef, C Rinke, R Stepanauskas, I Farag, T Woyke, MS Elshahed The ISME journal 9 (2), 447-460, 2015 | 88 | 2015 |
Horizontal gene transfer as an indispensable driver for Neocallimastigomycota evolution into a distinct gut-dwelling fungal lineage MSE Chelsea L. Murphy, Noha H. Youssef, Radwa A. Hanafy, M. B. Couger, Jason ... Appl. Environ. Microbiol., 2019 | 79* | 2019 |
Groundwater Elusimicrobia are metabolically diverse compared to gut microbiome Elusimicrobia and some have a novel nitrogenase paralog R Méheust, CJ Castelle, PB Matheus Carnevali, IF Farag, C He, LX Chen, ... The ISME journal 14 (12), 2907-2922, 2020 | 70 | 2020 |
Metabolic potentials of archaeal lineages resolved from metagenomes of deep Costa Rica sediments IF Farag, JF Biddle, R Zhao, AJ Martino, CH House, RI León-Zayas The ISME journal 14 (6), 1345-1358, 2020 | 44 | 2020 |
The Wood–Ljungdahl pathway as a key component of metabolic versatility in candidate phylum Bipolaricaulota (Acetothermia, OP1) NH Youssef, IF Farag, S Rudy, A Mulliner, K Walker, F Caldwell, M Miller, ... Environmental microbiology reports 11 (4), 538-547, 2019 | 39 | 2019 |
“Sifarchaeota,” a Novel Asgard Phylum from Costa Rican Sediment Capable of Polysaccharide Degradation and Anaerobic Methylotrophy IF Farag, R Zhao, JF Biddle Applied and Environmental Microbiology 87 (9), e02584-20, 2021 | 31 | 2021 |
Patterns of gene content and co-occurrence constrain the evolutionary path toward animal association in candidate phyla radiation bacteria AL Jaffe, AD Thomas, C He, R Keren, LE Valentin-Alvarado, P Munk, ... MBio 12 (4), 10.1128/mbio. 00521-21, 2021 | 26 | 2021 |
Microbial diversity and sulfur cycling in an early earth analogue: from ancient novelty to modern commonality CR Hahn, IF Farag, CL Murphy, M Podar, MS Elshahed, NH Youssef MBio 13 (2), e00016-22, 2022 | 22 | 2022 |
Candidatus Krumholzibacterium zodletonense gen. nov., sp nov, the first representative of the candidate phylum Krumholzibacteriota phyl. nov. recovered from an anoxic sulfidic … NH Youssef, IF Farag, CR Hahn, H Premathilake, E Fry, M Hart, ... Systematic and applied microbiology 42 (1), 85-93, 2019 | 22 | 2019 |
Genomic characterization of candidate division LCP-89 reveals an atypical cell wall structure, microcompartment production, and dual respiratory and fermentative capacities NH Youssef, IF Farag, CR Hahn, J Jarett, E Becraft, E Eloe-Fadrosh, ... Applied and environmental microbiology 85 (10), e00110-19, 2019 | 17 | 2019 |
Expanding the repertoire of electron acceptors for the anaerobic oxidation of methane in carbonates in the Atlantic and Pacific Ocean S Beckmann, IF Farag, R Zhao, GD Christman, NG Prouty, JF Biddle The ISME Journal 15 (9), 2523-2536, 2021 | 8 | 2021 |
Occurrence, Diversity, and Genomes of “Candidatus Patescibacteria” along the Early Diagenesis of Marine Sediments R Zhao, IF Farag, SL Jørgensen, JF Biddle Applied and Environmental Microbiology 88 (24), e01409-22, 2022 | 7 | 2022 |
Candidatus Mcinerneyibacterium aminivorans gen. nov., sp. nov., the first representative of the candidate phylum Mcinerneyibacteriota phyl. nov. recovered from a high … A Yadav, J Vilcáez, IF Farag, B Johnson, K Mueller, NH Youssef, ... Systematic and applied microbiology 43 (2), 126057, 2020 | 4 | 2020 |
Patterns of gene content and co-occurrence constrain the evolutionary path toward animal association in CPR bacteria AL Jaffe, C He, R Keren, LE Valentin-Alvarado, P Munk, ... bioRxiv, 2021.03. 03.433784, 2021 | 3 | 2021 |
Evidence for an expanded repertoire of electron acceptors for the anaerobic oxidation of methane in authigenic carbonates in the Atlantic and Pacific Ocean S Beckmann, IF Farag, R Zhao, GD Christman, NG Prouty, JF Biddle bioRxiv, 2020.06. 12.148429, 2020 | 3 | 2020 |