| Early life dynamics of the human gut virome and bacterial microbiome in infants ES Lim, Y Zhou, G Zhao, IK Bauer, L Droit, IM Ndao, BB Warner, PI Tarr, ... Nature medicine 21 (10), 1228-1234, 2015 | 626 | 2015 |
| Altered virome and bacterial microbiome in human immunodeficiency virus-associated acquired immunodeficiency syndrome CL Monaco, DB Gootenberg, G Zhao, SA Handley, MS Ghebremichael, ... Cell host & microbe 19 (3), 311-322, 2016 | 417 | 2016 |
| The ability of primate lentiviruses to degrade the monocyte restriction factor SAMHD1 preceded the birth of the viral accessory protein Vpx ES Lim, OI Fregoso, CO McCoy, FA Matsen, HS Malik, M Emerman Cell host & microbe 11 (2), 194-204, 2012 | 300 | 2012 |
| Identification of MW polyomavirus, a novel polyomavirus in human stool EA Siebrasse, A Reyes, ES Lim, G Zhao, RS Mkakosya, MJ Manary, ... Journal of virology 86 (19), 10321-10326, 2012 | 242 | 2012 |
| Discovery of STL polyomavirus, a polyomavirus of ancestral recombinant origin that encodes a unique T antigen by alternative splicing ES Lim, A Reyes, M Antonio, D Saha, UN Ikumapayi, M Adeyemi, ... Virology 436 (2), 295-303, 2013 | 236 | 2013 |
| Ancient adaptive evolution of tetherin shaped the functions of Vpu and Nef in human immunodeficiency virus and primate lentiviruses ES Lim, HS Malik, M Emerman Journal of virology 84 (14), 7124-7134, 2010 | 170 | 2010 |
| Amniotic fluid from healthy term pregnancies does not harbor a detectable microbial community ES Lim, C Rodriguez, LR Holtz Microbiome 6, 1-8, 2018 | 153 | 2018 |
| An 81-nucleotide deletion in SARS-CoV-2 ORF7a identified from sentinel surveillance in Arizona (January to March 2020) LRA Holland, EA Kaelin, R Maqsood, B Estifanos, LI Wu, A Varsani, ... Journal of virology 94 (14), 10.1128/jvi. 00711-20, 2020 | 147 | 2020 |
| VirusSeeker, a computational pipeline for virus discovery and virome composition analysis G Zhao, G Wu, ES Lim, L Droit, S Krishnamurthy, DH Barouch, HW Virgin, ... Virology 503, 21-30, 2017 | 141 | 2017 |
| High-throughput sequencing of SARS-CoV-2 in wastewater provides insights into circulating variants RS Fontenele, S Kraberger, J Hadfield, EM Driver, D Bowes, LRA Holland, ... Water Research 205, 117710, 2021 | 138 | 2021 |
| The bacterial microbiome and virome milestones of infant development ES Lim, D Wang, LR Holtz Trends in microbiology 24 (10), 801-810, 2016 | 135 | 2016 |
| An intracellular pathogen response pathway promotes proteostasis in C. elegans KC Reddy, T Dror, JN Sowa, J Panek, K Chen, ES Lim, D Wang, ... Current Biology 27 (22), 3544-3553. e5, 2017 | 90 | 2017 |
| Discordant transmission of bacteria and viruses from mothers to babies at birth R Maqsood, R Rodgers, C Rodriguez, SA Handley, IM Ndao, PI Tarr, ... Microbiome 7, 1-13, 2019 | 89 | 2019 |
| Characterization of BK polyomaviruses from kidney transplant recipients suggests a role for APOBEC3 in driving in-host virus evolution A Peretti, EM Geoghegan, DV Pastrana, S Smola, P Feld, M Sauter, ... Cell host & microbe 23 (5), 628-635. e7, 2018 | 73 | 2018 |
| Vpx overcomes a SAMHD1-independent block to HIV reverse transcription that is specific to resting CD4 T cells HM Baldauf, L Stegmann, SM Schwarz, I Ambiel, M Trotard, M Martin, ... Proceedings of the National Academy of Sciences 114 (10), 2729-2734, 2017 | 53 | 2017 |
| Gut DNA virome diversity and its association with host bacteria regulate inflammatory phenotype and neuronal immunotoxicity in experimental gulf war illness RK Seth, R Maqsood, A Mondal, D Bose, D Kimono, LRA Holland, ... Viruses 11 (10), 968, 2019 | 43 | 2019 |
| The function and evolution of the restriction factor Viperin in primates was not driven by lentiviruses ES Lim, LI Wu, HS Malik, M Emerman Retrovirology 9, 1-12, 2012 | 34 | 2012 |
| Simian Immunodeficiency Virus SIVagm from African Green Monkeys Does Not Antagonize Endogenous Levels of African Green Monkey Tetherin/BST-2 ES Lim, M Emerman Journal of virology 83 (22), 11673-11681, 2009 | 32 | 2009 |
| The major locus for mouse adenovirus susceptibility maps to genes of the hematopoietic cell surface-expressed LY6 family KR Spindler, AR Welton, ES Lim, S Duvvuru, IW Althaus, JE Imperiale, ... The Journal of Immunology 184 (6), 3055-3062, 2010 | 29 | 2010 |
| An early pandemic analysis of SARS-CoV-2 population structure and dynamics in Arizona JT Ladner, BB Larsen, JR Bowers, CM Hepp, E Bolyen, M Folkerts, ... MBio 11 (5), 10.1128/mbio. 02107-20, 2020 | 27 | 2020 |
