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Sina Majidian
Sina Majidian
Postdoctoral Fellow at Johns Hopkins University
在 jhu.edu 的电子邮件经过验证 - 首页
标题
引用次数
引用次数
年份
Inference of phylogenetic trees directly from raw sequencing reads using Read2Tree
D Dylus, A Altenhoff, S Majidian, FJ Sedlazeck, C Dessimoz
Nature Biotechnology 42 (1), 139-147, 2024
222024
Hap10: reconstructing accurate and long polyploid haplotypes using linked reads
S Majidian, MH Kahaei, D de Ridder
BMC Bioinformatics, 2020
182020
OMA orthology in 2024: improved prokaryote coverage, ancestral and extant GO enrichment, a revamped synteny viewer and more in the OMA Ecosystem
AM Altenhoff, AW Vesztrocy, C Bernard, CM Train, A Nicheperovich, ...
Nucleic Acids Research, gkad1020, 2024
132024
Genomic variant benchmark: if you cannot measure it, you cannot improve it
S Majidian, DP Agustinho, CS Chin, FJ Sedlazeck, M Mahmoud
Genome Biology 24 (1), 221, 2023
112023
PhaseME: Automatic rapid assessment of phasing quality and phasing improvement
S Majidian, FJ Sedlazeck
Gigascience 9 (7), giaa078, 2020
102020
Minimum error correction based haplotype assembly: considerations for long read data
S Majidian, MH Kahaei, D de Ridder
PLOS one, 2020
102020
Responses of cucumber (Cucumis sativus L.) rhizosphere microbial community to some agronomic management practices
R Ezazi, M Ahmadzadeh, S Majidian, E Stefani, M Pindo, C Donati
FEMS Microbiology Ecology 97 (8), fiab107, 2021
72021
NGS based haplotype assembly using matrix completion
S Majidian, MH Kahaei
PLoS ONE 14 (3), e0214455, 2019
72019
Matrix completion with weighted constraint for haplotype estimation
S Majidian, MM Mohades, MH Kahaei
Digital Signal Processing 108, 102880, 2021
62021
Haplotype assembly using manifold optimization and error correction mechanism
MM Mohades, S Majidian, MH Kahaei
IEEE Signal Processing Letters 26 (6), 868 - 872, 2019
62019
Anti-angiogenic effects of testis-specific gene antigen 10 on primary endothelial cells
E Valipour, VT Nooshabadi, S Mahdipour, S Shabani, L Farhady-Tooli, ...
Gene 754, 144856, 2020
52020
The third international hackathon for applying insights into large-scale genomic composition to use cases in a wide range of organisms
K Walker, D Kalra, R Lowdon, G Chen, D Molik, DC Soto, F Dabbaghie, ...
F1000Research 11, 2022
42022
The GIAB genomic stratifications resource for human reference genomes
N Dwarshuis, D Kalra, J McDaniel, P Sanio, P Alvarez Jerez, B Jadhav, ...
bioRxiv, 2023.10. 27.563846, 2023
22023
OMAMO: orthology-based alternative model organism selection
A Nicheperovich, AM Altenhoff, C Dessimoz, S Majidian
Bioinformatics 38 (10), 2965-2966, 2022
22022
Matrix Completion Using Graph Total Variation Based on Directed Laplacian Matrix
A Ahmadi, S Majidian, MH Kahaei
Circuits, Systems, and Signal Processing, 1-8, 2021
12021
The fifth international hackathon for developing computational cloud-based tools and resources for pan-structural variation and genomics
SK Deb, D Kalra, J Kubica, E Stricker, VQ Truong, Q Zeng, CJ Fiscus, ...
F1000Research 13, 708, 2024
2024
Transcriptomic data reveals the dynamics of terpenoids biosynthetic pathway of fenugreek
SL Javan, AB Kashkooli, AA Shojaeiyan, S Majidian
BMC genomics 25 (1), 390, 2024
2024
Orthology inference at scale with FastOMA
S Majidian, Y Nevers, A Yazdizadeh Kharrazi, A Warwick Vesztrocy, ...
bioRxiv, 2024.01. 29.577392, 2024
2024
Inferring the selective history of CNVs using a maximum likelihood model
SA Malekpour, A Kalirad, S Majidian
bioRxiv, 2024.01. 15.575676, 2024
2024
Phylogenetic placement of whole genome duplications in yeasts through quantitative analysis of hierarchical orthologous groups
S Moix, N Glover, S Majidian
F1000Research 12, 382, 2023
2023
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