| An Integrated Encyclopedia of DNA Elements in the Human Genome J Khatun Nature, 2012 | 13077* | 2012 |
| The GENCODE v7 catalog of human long noncoding RNAs: analysis of their gene structure, evolution, and expression T Derrien, R Johnson, G Bussotti, A Tanzer, S Djebali, H Tilgner, ... Genome research 22 (9), 1775-1789, 2012 | 5005 | 2012 |
| Long noncoding RNAs with enhancer-like function in human cells UA Ørom, T Derrien, M Beringer, K Gumireddy, A Gardini, G Bussotti, ... Cell 143 (1), 46-58, 2010 | 1909 | 2010 |
| A comparative encyclopedia of DNA elements in the mouse genome F Yue, Y Cheng, A Breschi, J Vierstra, W Wu, T Ryba, R Sandstrom, Z Ma, ... Nature 515 (7527), 355-364, 2014 | 1776 | 2014 |
| CARMEN, a human super enhancer-associated long noncoding RNA controlling cardiac specification, differentiation and homeostasis S Ounzain, R Micheletti, C Arnan, I Plaisance, D Cecchi, B Schroen, ... Journal of molecular and cellular cardiology 89, 98-112, 2015 | 229 | 2015 |
| Multiple sequence alignment modeling: methods and applications M Chatzou, C Magis, JM Chang, C Kemena, G Bussotti, I Erb, ... Briefings in bioinformatics 17 (6), 1009-1023, 2016 | 207 | 2016 |
| Quantitative gene profiling of long noncoding RNAs with targeted RNA sequencing MB Clark, TR Mercer, G Bussotti, T Leonardi, KR Haynes, J Crawford, ... Nature methods 12 (4), 339-342, 2015 | 161 | 2015 |
| Modulation of Aneuploidy in Leishmania donovani during Adaptation to Different In Vitro and In Vivo Environments and Its Impact on Gene Expression F Dumetz, H Imamura, M Sanders, V Seblova, J Myskova, P Pescher, ... MBio 8 (3), 10.1128/mbio. 00599-17, 2017 | 140 | 2017 |
| Using the T-Coffee package to build multiple sequence alignments of protein, RNA, DNA sequences and 3D structures JF Taly, C Magis, G Bussotti, JM Chang, P Di Tommaso, I Erb, ... Nature protocols 6 (11), 1669-1682, 2011 | 111 | 2011 |
| Exploring the gonad transcriptome of two extreme male pigs with RNA-seq A Esteve-Codina, R Kofler, N Palmieri, G Bussotti, C Notredame, ... BMC genomics 12 (1), 1-14, 2011 | 105 | 2011 |
| Haplotype selection as an adaptive mechanism in the protozoan pathogen Leishmania donovani P Prieto Barja, P Pescher, G Bussotti, F Dumetz, H Imamura, D Kedra, ... Nature ecology & evolution 1 (12), 1961-1969, 2017 | 98 | 2017 |
| Leishmania Genome Dynamics during Environmental Adaptation Reveal Strain-Specific Differences in Gene Copy Number Variation, Karyotype Instability, and … G Bussotti, E Gouzelou, M Côrtes Boité, I Kherachi, Z Harrat, N Eddaikra, ... MBio 9 (6), 10.1128/mbio. 01399-18, 2018 | 87 | 2018 |
| Enhanced transcriptome maps from multiple mouse tissues reveal evolutionary constraint in gene expression DD Pervouchine, S Djebali, A Breschi, CA Davis, PP Barja, A Dobin, ... Nature communications 6 (1), 5903, 2015 | 84 | 2015 |
| T-Coffee: Tree-based consistency objective function for alignment evaluation C Magis, JF Taly, G Bussotti, JM Chang, P Di Tommaso, I Erb, ... Multiple Sequence Alignment Methods, 117-129, 2014 | 70 | 2014 |
| Intron retention-dependent gene regulation in Cryptococcus neoformans S Gonzalez-Hilarion, D Paulet, KT Lee, CC Hon, P Lechat, E Mogensen, ... Scientific reports 6 (1), 32252, 2016 | 54 | 2016 |
| Targeting macrophage histone H3 modification as a leishmania strategy to dampen the NF-κB/NLRP3-mediated inflammatory response H Lecoeur, E Prina, T Rosazza, K Kokou, P N’Diaye, N Aulner, H Varet, ... Cell Reports 30 (6), 1870-1882. e4, 2020 | 53 | 2020 |
| Non-coding RNA expression, function, and variation during Drosophila embryogenesis IE Schor, G Bussotti, M Maleš, M Forneris, RR Viales, AJ Enright, ... Current Biology 28 (22), 3547-3561. e9, 2018 | 44 | 2018 |
| Transposon‐driven transcription is a conserved feature of vertebrate spermatogenesis and transcript evolution MP Davis, C Carrieri, HK Saini, S van Dongen, T Leonardi, G Bussotti, ... EMBO reports 18 (7), 1231-1247, 2017 | 40 | 2017 |
| Detecting and comparing non-coding RNAs in the high-throughput era G Bussotti, C Notredame, AJ Enright International journal of molecular sciences 14 (8), 15423-15458, 2013 | 34 | 2013 |
| BlastR—fast and accurate database searches for non-coding RNAs G Bussotti, E Raineri, I Erb, M Zytnicki, A Wilm, E Beaudoing, P Bucher, ... Nucleic acids research 39 (16), 6886-6895, 2011 | 33 | 2011 |
