Daniel R. Mende 个人学术档案

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Peer BorkDirector of EMBL Heidelberg在 embl.de 的电子邮件经过验证
Shinichi SunagawaETH Zurich; Swiss Institute of Bioinformatics在 ethz.ch 的电子邮件经过验证
Jaime Huerta-CepasGroup Leader at CBGP (UPM-INIA-CSIC), Madrid, Spain在 embl.de 的电子邮件经过验证
Sofia K. ForslundJunior Group Leader, ECRC (joint Max Delbrück Center and Charité University Hospital unit), Berlin在 embl.de 的电子邮件经过验证
Ivica Letunićbiobyte solutions GmbH在 biobyte.de 的电子邮件经过验证
edward francis delongProfessor, University of Hawaii, Manoa在 hawaii.edu 的电子邮件经过验证
Damian SzklarczykSIB Swiss Institute of Bioinformatics / University of Zurich在 isb-sib.ch 的电子邮件经过验证
Christian von MeringProfessor of Computational Biology, University of Zurich and Swiss Institute of Bioinformatics在 imls.uzh.ch 的电子邮件经过验证
Manimozhiyan ArumugamAssociate Professor, Faculty of Health and Medical Sciences, University of Copenhagen在 sund.ku.dk 的电子邮件经过验证
Georg ZellerEMBL, Heidelberg在 embl.de 的电子邮件经过验证
Luis Pedro CoelhoCentre for Microbiome Research, Queensland University of Technology在 qut.edu.au 的电子邮件经过验证
Jens Roat KultimaDanish Competition and Consumer Agency; Bioinformatics and Economic Fraud Specialist在 kfst.dk 的电子邮件经过验证
Thomas Sebastian B. SchmidtSchool of Medicine & APC Microbiome, University College Cork在 ucc.ie 的电子邮件经过验证
Alison S. WallerBrock University在 brocku.ca 的电子邮件经过验证
Julien TapINRAE在 inrae.fr 的电子邮件经过验证
Vera van Noortprofessor, KULeuven在 biw.kuleuven.be 的电子邮件经过验证
Henrik Bjørn NielsenChief Scientific Officer, Clinical-Microbiomics A/S在 clinical-microbiomics.com 的电子邮件经过验证
Nassos TypasGroup Leader, EMBL在 embl.de 的电子邮件经过验证
George WeinstockDirector of Microbial Genomics, Professor, Jackson Laboratory在 jax.org 的电子邮件经过验证
Shamil SunyaevProfessor of Biomedical Informatics and of Medicine (BWH), Harvard Medical School在 rics.bwh.harvard.edu 的电子邮件经过验证

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Daniel R. Mende

Asst. Professor, Amsterdam University Medical Center, University of Amsterdam

在 amsterdamumc.nl 的电子邮件经过验证

Computational Biology Bioinformatics Evolution Clinical Microbiology


标题按引用次数排序按年份排序按标题排序	引用次数引用次数	年份
A human gut microbial gene catalogue established by metagenomic sequencing J Qin, R Li, J Raes, M Arumugam, KS Burgdorf, C Manichanh, T Nielsen, ... nature 464 (7285), 59-65, 2010	13130	2010
Enterotypes of the human gut microbiome M Arumugam, J Raes, E Pelletier, D Le Paslier, T Yamada, DR Mende, ... nature 473 (7346), 174-180, 2011	8229	2011
eggNOG 5.0: a hierarchical, functionally and phylogenetically annotated orthology resource based on 5090 organisms and 2502 viruses J Huerta-Cepas, D Szklarczyk, D Heller, A Hernández-Plaza, SK Forslund, ... Nucleic acids research 47 (D1), D309-D314, 2019	2897	2019
Structure and function of the global ocean microbiome S Sunagawa, LP Coelho, S Chaffron, JR Kultima, K Labadie, G Salazar, ... Science 348 (6237), 1261359, 2015	2402	2015
eggNOG 4.5: a hierarchical orthology framework with improved functional annotations for eukaryotic, prokaryotic and viral sequences J Huerta-Cepas, D Szklarczyk, K Forslund, H Cook, D Heller, MC Walter, ... Nucleic acids research 44 (D1), D286-D293, 2016	1945	2016
Potential of fecal microbiota for early‐stage detection of colorectal cancer G Zeller, J Tap, AY Voigt, S Sunagawa, JR Kultima, PI Costea, A Amiot, ... Molecular systems biology 10 (11), 766, 2014	1067	2014
Genomic variation landscape of the human gut microbiome S Schloissnig, M Arumugam, S Sunagawa, M Mitreva, J Tap, A Zhu, ... Nature 493 (7430), 45-50, 2013	945	2013
Metabolic dependencies drive species co-occurrence in diverse microbial communities A Zelezniak, S Andrejev, O Ponomarova, DR Mende, P Bork, KR Patil Proceedings of the National Academy of Sciences 112 (20), 6449-6454, 2015	669	2015
Metagenomic species profiling using universal phylogenetic marker genes S Sunagawa, DR Mende, G Zeller, F Izquierdo-Carrasco, SA Berger, ... Nature methods 10 (12), 1196-1199, 2013	508	2013
Country-specific antibiotic use practices impact the human gut resistome K Forslund, S Sunagawa, JR Kultima, DR Mende, M Arumugam, A Typas, ... Genome research 23 (7), 1163-1169, 2013	436	2013
Microbial abundance, activity and population genomic profiling with mOTUs2 A Milanese, DR Mende, L Paoli, G Salazar, HJ Ruscheweyh, M Cuenca, ... Nature communications 10 (1), 1014, 2019	365	2019
Accurate and universal delineation of prokaryotic species DR Mende, S Sunagawa, G Zeller, P Bork Nature methods 10 (9), 881-884, 2013	328	2013
Assessment of metagenomic assembly using simulated next generation sequencing data DR Mende, AS Waller, S Sunagawa, AI Järvelin, MM Chan, M Arumugam, ... PloS one 7 (2), e31386, 2012	275	2012
Deciphering a global network of functionally associated post‐translational modifications P Minguez, L Parca, F Diella, DR Mende, R Kumar, M Helmer‐Citterich, ... Molecular systems biology 8 (1), 599, 2012	274	2012
Role for urea in nitrification by polar marine Archaea L Alonso-Sáez, AS Waller, DR Mende, K Bakker, H Farnelid, PL Yager, ... Proceedings of the National Academy of Sciences 109 (44), 17989-17994, 2012	267	2012
MOCAT: a metagenomics assembly and gene prediction toolkit JR Kultima, S Sunagawa, J Li, W Chen, H Chen, DR Mende, ... Public Library of Science 7 (10), e47656, 2012	222	2012
Siderophore-based microbial adaptations to iron scarcity across the eastern Pacific Ocean RM Boiteau, DR Mende, NJ Hawco, MR McIlvin, JN Fitzsimmons, ... Proceedings of the National Academy of Sciences 113 (50), 14237-14242, 2016	208	2016
Inter-individual differences in the gene content of human gut bacterial species A Zhu, S Sunagawa, DR Mende, P Bork Genome biology 16, 1-13, 2015	206	2015
Critical assessment of metagenome interpretation: the second round of challenges F Meyer, A Fritz, ZL Deng, D Koslicki, TR Lesker, A Gurevich, G Robertson, ... Nature methods 19 (4), 429-440, 2022	203	2022
Environmental drivers of a microbial genomic transition zone in the ocean’s interior DR Mende, JA Bryant, FO Aylward, JM Eppley, T Nielsen, DM Karl, ... Nature Microbiology 2 (10), 1367-1373, 2017	152	2017

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