| BEAST 2.5: An advanced software platform for Bayesian evolutionary analysis R Bouckaert, TG Vaughan, J Barido-Sottani, S Duchêne, M Fourment, ... PLoS computational biology 15 (4), e1006650, 2019 | 3057 | 2019 |
| Taming the BEAST—A community teaching material resource for BEAST 2 J Barido-Sottani, V Bošková, LD Plessis, D Kühnert, C Magnus, V Mitov, ... Systematic biology 67 (1), 170-174, 2018 | 109 | 2018 |
| Ignoring stratigraphic age uncertainty leads to erroneous estimates of species divergence times under the fossilized birth–death process J Barido-Sottani, G Aguirre-Fernández, MJ Hopkins, T Stadler, R Warnock Proceedings of the Royal Society B 286 (1902), 20190685, 2019 | 60 | 2019 |
| A multitype birth–death model for Bayesian inference of lineage-specific birth and death rates J Barido-Sottani, TG Vaughan, T Stadler Systematic biology 69 (5), 973-986, 2020 | 59 | 2020 |
| RevGadgets: An R package for visualizing Bayesian phylogenetic analyses from RevBayes CM Tribble, WA Freyman, MJ Landis, JY Lim, J Barido‐Sottani, ... Methods in Ecology and Evolution 13 (2), 314-323, 2022 | 54 | 2022 |
| Ignoring fossil age uncertainty leads to inaccurate topology and divergence time estimates in time calibrated tree inference J Barido-Sottani, NMA Van Tiel, MJ Hopkins, DF Wright, T Stadler, ... Frontiers in Ecology and Evolution 8, 183, 2020 | 30 | 2020 |
| FossilSim: An r package for simulating fossil occurrence data under mechanistic models of preservation and recovery J Barido‐Sottani, W Pett, JE O’Reilly, RCM Warnock Methods in Ecology and Evolution 10 (6), 835-840, 2019 | 30 | 2019 |
| Detection of HIV transmission clusters from phylogenetic trees using a multi-state birth–death model J Barido-Sottani, TG Vaughan, T Stadler Journal of the Royal Society Interface 15 (146), 20180512, 2018 | 26 | 2018 |
| Integrating fossil observations into phylogenetics using the fossilized birth–death model AM Wright, DW Bapst, J Barido-Sottani, RCM Warnock Annual Review of Ecology, Evolution, and Systematics 53 (1), 251-273, 2022 | 22 | 2022 |
| Improved multi-type birth-death phylodynamic inference in BEAST 2 J Scire, J Barido-Sottani, D Kühnert, TG Vaughan, T Stadler BioRxiv, 2020.01. 06.895532, 2020 | 20 | 2020 |
| Seven rules for simulations in paleobiology J Barido-Sottani, EE Saupe, TM Smiley, LC Soul, AM Wright, ... Paleobiology 46 (4), 435-444, 2020 | 19 | 2020 |
| Convergent adaptation of true crabs (Decapoda: Brachyura) to a gradient of terrestrial environments JM Wolfe, L Ballou, J Luque, VM Watson-Zink, ST Ahyong, ... Systematic biology, syad066, 2023 | 13 | 2023 |
| The occurrence birth–death process for combined-evidence analysis in macroevolution and epidemiology J Andréoletti, A Zwaans, RCM Warnock, G Aguirre-Fernández, ... Systematic Biology 71 (6), 1440-1452, 2022 | 12 | 2022 |
| Robust phylodynamic analysis of genetic sequencing data from structured populations J Scire, J Barido-Sottani, D Kühnert, TG Vaughan, T Stadler Viruses 14 (8), 1648, 2022 | 12 | 2022 |
| Putting the F into FBD analysis: tree constraints or morphological data? J Barido‐Sottani, A Pohle, K De Baets, D Murdock, RCM Warnock Palaeontology 66 (6), e12679, 2023 | 8 | 2023 |
| Estimating a time-calibrated phylogeny of fossil and extant taxa using RevBayes J Barido-Sottani, JA Justison, AM Wright, RCM Warnock, W Pett, TA Heath Phylogenetics in the genomic era, 5.2: 1--5.2: 23, 2020 | 8 | 2020 |
| A skyline birth-death process for inferring the population size from a reconstructed tree with occurrences J Andréoletti, A Zwaans, RCM Warnock, G Aguirre-Fernández, ... BioRxiv, 2020.10. 27.356758, 2020 | 7 | 2020 |
| Measuring similarity between gene interaction profiles J Barido-Sottani, SD Chapman, E Kosman, AR Mushegian BMC bioinformatics 20, 1-13, 2019 | 7 | 2019 |
| The ClaDS rate-heterogeneous birth–death prior for full phylogenetic inference in BEAST2 J Barido-Sottani, H Morlon Systematic Biology 72 (5), 1180-1187, 2023 | 4 | 2023 |
| Estimating the age of poorly dated fossil specimens and deposits using a total-evidence approach and the fossilized birth-death process J Barido-Sottani, D Żyła, TA Heath Systematic Biology 72 (2), 466-475, 2023 | 4 | 2023 |
