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Sierra Moxon
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The gene ontology knowledgebase in 2023
SA Aleksander, J Balhoff, S Carbon, JM Cherry, HJ Drabkin, D Ebert, ...
Genetics 224 (1), iyad031, 2023
532*2023
The Zebrafish Information Network: the zebrafish model organism database
J Sprague, L Bayraktaroglu, D Clements, T Conlin, D Fashena, K Frazer, ...
Nucleic acids research 34 (suppl_1), D581-D585, 2006
3262006
ZFIN, the Zebrafish Model Organism Database: increased support for mutants and transgenics
DG Howe, YM Bradford, T Conlin, AE Eagle, D Fashena, K Frazer, ...
Nucleic acids research 41 (D1), D854-D860, 2012
2992012
ZFIN: enhancements and updates to the Zebrafish Model Organism Database
Y Bradford, T Conlin, N Dunn, D Fashena, K Frazer, DG Howe, J Knight, ...
Nucleic acids research 39 (suppl_1), D822-D829, 2010
2622010
Zebrafish models of human disease: gaining insight into human disease at ZFIN
YM Bradford, S Toro, S Ramachandran, L Ruzicka, DG Howe, A Eagle, ...
ILAR journal 58 (1), 4-16, 2017
1692017
The Zebrafish Information Network: the zebrafish model organism database provides expanded support for genotypes and phenotypes
J Sprague, L Bayraktaroglu, Y Bradford, T Conlin, N Dunn, D Fashena, ...
Nucleic acids research 36 (suppl_1), D768-D772, 2007
1622007
The Zebrafish Information Network: new support for non-coding genes, richer Gene Ontology annotations and the Alliance of Genome Resources
L Ruzicka, DG Howe, S Ramachandran, S Toro, CE Van Slyke, ...
Nucleic acids research 47 (D1), D867-D873, 2019
1532019
Zebrafish information network, the knowledgebase for Danio rerio research
YM Bradford, CE Van Slyke, L Ruzicka, A Singer, A Eagle, D Fashena, ...
Genetics 220 (4), iyac016, 2022
1192022
The Zebrafish Model Organism Database: new support for human disease models, mutation details, gene expression phenotypes and searching
DG Howe, YM Bradford, A Eagle, D Fashena, K Frazer, P Kalita, P Mani, ...
Nucleic acids research 45 (D1), D758-D768, 2017
1012017
ZFIN, The zebrafish model organism database: Updates and new directions
L Ruzicka, YM Bradford, K Frazer, DG Howe, H Paddock, ...
genesis 53 (8), 498-509, 2015
882015
The zebrafish anatomy and stage ontologies: representing the anatomy and development of Danio rerio
CE Van Slyke, YM Bradford, M Westerfield, MA Haendel
Journal of biomedical semantics 5, 1-11, 2014
692014
Harmonizing model organism data in the Alliance of Genome Resources
Genetics 220 (4), iyac022, 2022
642022
A simple standard for sharing ontological mappings (SSSOM)
N Matentzoglu, JP Balhoff, SM Bello, C Bizon, M Brush, TJ Callahan, ...
Database 2022, baac035, 2022
522022
Biolink Model: A universal schema for knowledge graphs in clinical, biomedical, and translational science
DR Unni, SAT Moxon, M Bada, M Brush, R Bruskiewich, JH Caufield, ...
Clinical and translational science 15 (8), 1848-1855, 2022
492022
Structured prompt interrogation and recursive extraction of semantics (SPIRES): A method for populating knowledge bases using zero-shot learning
JH Caufield, H Hegde, V Emonet, NL Harris, MP Joachimiak, ...
Bioinformatics 40 (3), btae104, 2024
452024
InterMOD: integrated data and tools for the unification of model organism research
J Sullivan, K Karra, SAT Moxon, A Vallejos, H Motenko, JD Wong, ...
Scientific reports 3 (1), 1802, 2013
412013
Model organism data evolving in support of translational medicine
DG Howe, JA Blake, YM Bradford, CJ Bult, BR Calvi, SR Engel, JA Kadin, ...
Lab Animal 47 (10), 277-289, 2018
372018
Cross‐organism analysis using InterMine
R Lyne, J Sullivan, D Butano, S Contrino, J Heimbach, F Hu, A Kalderimis, ...
genesis 53 (8), 547-560, 2015
302015
The Linked Data Modeling Language (LinkML): A General-Purpose Data Modeling Framework Grounded in Machine-Readable Semantics.
SAT Moxon, H Solbrig, DR Unni, D Jiao, RM Bruskiewich, JP Balhoff, ...
ICBO 3073, 148-151, 2021
252021
The Zebrafish Information Network: major gene page and home page updates
DG Howe, S Ramachandran, YM Bradford, D Fashena, S Toro, A Eagle, ...
Nucleic Acids Research 49 (D1), D1058-D1064, 2021
232021
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