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Bryan Thornlow
Bryan Thornlow
在 ucsc.edu 的电子邮件经过验证
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引用次数
引用次数
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Ultrafast Sample placement on Existing tRees (UShER) enables real-time phylogenetics for the SARS-CoV-2 pandemic
Y Turakhia, B Thornlow, AS Hinrichs, N De Maio, L Gozashti, R Lanfear, ...
Nature genetics 53 (6), 809-816, 2021
3132021
Stability of SARS-CoV-2 phylogenies
Y Turakhia, N De Maio, B Thornlow, L Gozashti, R Lanfear, CR Walker, ...
PLoS genetics 16 (11), e1009175, 2020
1042020
Pandemic-scale phylogenomics reveals the SARS-CoV-2 recombination landscape
Y Turakhia, B Thornlow, A Hinrichs, J McBroome, N Ayala, C Ye, K Smith, ...
Nature 609 (7929), 994-997, 2022
902022
A daily-updated database and tools for comprehensive SARS-CoV-2 mutation-annotated trees
J McBroome, B Thornlow, AS Hinrichs, A Kramer, N De Maio, N Goldman, ...
Molecular biology and evolution 38 (12), 5819-5824, 2021
762021
Transfer RNA genes experience exceptionally elevated mutation rates
BP Thornlow, J Hough, JM Roger, H Gong, TM Lowe, RB Corbett-Detig
Proceedings of the National Academy of Sciences 115 (36), 8996-9001, 2018
512018
Pandemic-scale phylogenomics reveals elevated recombination rates in the SARS-CoV-2 spike region
Y Turkahia, B Thornlow, A Hinrichs, J McBroome, N Ayala, C Ye, ...
BioRxiv, 2021
422021
Estimating the timing of multiple admixture pulses during local ancestry inference
P Medina, B Thornlow, R Nielsen, R Corbett-Detig
Genetics 210 (3), 1089-1107, 2018
392018
Predicting transfer RNA gene activity from sequence and genome context
BP Thornlow, J Armstrong, AD Holmes, JM Howard, RB Corbett-Detig, ...
Genome research 30 (1), 85-94, 2020
322020
Transposable elements drive intron gain in diverse eukaryotes
L Gozashti, SW Roy, B Thornlow, A Kramer, M Ares Jr, R Corbett-Detig
Proceedings of the National Academy of Sciences 119 (48), e2209766119, 2022
282022
matOptimize: a parallel tree optimization method enables online phylogenetics for SARS-CoV-2
C Ye, B Thornlow, A Hinrichs, A Kramer, C Mirchandani, D Torvi, ...
Bioinformatics 38 (15), 3734-3740, 2022
222022
Eukaryotic tRNA sequences present conserved and amino acid-specific structural signatures
E Westhof, B Thornlow, PP Chan, TM Lowe
Nucleic Acids Research 50 (7), 4100-4112, 2022
172022
Online phylogenetics using parsimony produces slightly better trees and is dramatically more efficient for large SARS-CoV-2 phylogenies than de novo and maximum-likelihood …
B Thornlow, A Kramer, C Ye, N De Maio, J McBroome, AS Hinrichs, ...
BioRxiv, 2021
102021
A new SARS-CoV-2 lineage that shares mutations with known Variants of Concern is rejected by automated sequence repository quality control
B Thornlow, AS Hinrichs, M Jain, N Dhillon, S La, JD Kapp, I Anigbogu, ...
biorxiv, 2021
72021
DecentTree: scalable Neighbour-Joining for the genomic era
W Wang, J Barbetti, T Wong, B Thornlow, R Corbett-Detig, Y Turakhia, ...
Bioinformatics 39 (9), btad536, 2023
62023
Online Phylogenetics with matOptimize Produces Equivalent Trees and is Dramatically More Efficient for Large SARS-CoV-2 Phylogenies than de novo and …
AM Kramer, B Thornlow, C Ye, N De Maio, J McBroome, AS Hinrichs, ...
Systematic Biology 72 (5), 1039-1051, 2023
52023
Pandemic-scale phylogenetics
C Ye, B Thornlow, A Kramer, J McBroome, A Hinrichs, R Corbett-Detig, ...
bioRxiv, 2021
52021
matutils: Tools to interpret and manipulate mutation annotated trees
J McBroome, B Thornlow, AS Hinrichs, N De Maio, N Goldman, ...
life sciences 15, 475-476, 2021
52021
Ultrafast sample placement on existing trees (UShER) empowers real-time phylogenetics for the SARS-CoV-2 pandemic. bioRxiv preprint Server Biol
Y Turakhia, B Thornlow, AS Hinrichs, N De Maio, L Gozashti, R Lanfear, ...
22020
LINE1 Reverse Transcriptase Inhibitors Abrogate Type 1 Interferon Responses
D Rios, N Hafeez, B Desrosiers, S Rao, J Floro, J Baddour, N Perez, ...
ARTHRITIS & RHEUMATOLOGY 74, 3376-3377, 2022
12022
DecentTree: Scalable Neighbour-Joining for the Genomic Era (preprint)
W Wang, J Barbetti, T Wong, B Thornlow, R Corbett-Detig, Y Turakhia, ...
2022
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