| VirSorter2: a multi-classifier, expert-guided approach to detect diverse DNA and RNA viruses J Guo, B Bolduc, AA Zayed, A Varsani, G Dominguez-Huerta, TO Delmont, ... Microbiome 9, 1-13, 2021 | 592 | 2021 |
| The significance of mutualistic phages for bacterial ecology and evolution N Obeng, AA Pratama, JD van Elsas Trends in microbiology 24 (6), 440-449, 2016 | 191 | 2016 |
| The ‘neglected’soil virome–potential role and impact AA Pratama, JD Van Elsas Trends in Microbiology 26 (8), 649-662, 2018 | 177 | 2018 |
| Cryptic and abundant marine viruses at the evolutionary origins of Earth’s RNA virome AA Zayed, JM Wainaina, G Dominguez-Huerta, E Pelletier, J Guo, ... Science 376 (6589), 156-162, 2022 | 152 | 2022 |
| Expanding standards in viromics: in silico evaluation of dsDNA viral genome identification, classification, and auxiliary metabolic gene curation AA Pratama, B Bolduc, AA Zayed, ZP Zhong, J Guo, DR Vik, MC Gazitúa, ... PeerJ 9, e11447, 2021 | 66 | 2021 |
| Diversity and ecological footprint of Global Ocean RNA viruses G Dominguez-Huerta, AA Zayed, JM Wainaina, J Guo, F Tian, ... Science 376 (6598), 1202-1208, 2022 | 49 | 2022 |
| The role of rhizosphere bacteriophages in plant health AA Pratama, J Terpstra, ALM de Oliveria, JF Salles Trends in Microbiology 28 (9), 709-718, 2020 | 47 | 2020 |
| Microbial interactions in soil JD Van Elsas, AA Pratama, WL de Araujo, JT Trevors Modern soil microbiology, third edition, 141-161, 2019 | 31 | 2019 |
| Evolutionary History of Bacteriophages in the Genus Paraburkholderia AA Pratama, M Chaib De Mares, JD Van Elsas Frontiers in microbiology 9, 835, 2018 | 19 | 2018 |
| Interrogating the viral dark matter of the rumen ecosystem with a global virome database M Yan, AA Pratama, S Somasundaram, Z Li, Y Jiang, MB Sullivan, Z Yu Nature Communications 14 (1), 5254, 2023 | 18 | 2023 |
| Gene mobility in microbiomes of the mycosphere and mycorrhizosphere–role of plasmids and bacteriophages AA Pratama, JD van Elsas FEMS microbiology ecology 95 (5), fiz053, 2019 | 18 | 2019 |
| A novel inducible prophage from the mycosphere inhabitant Paraburkholderia terrae BS437 AA Pratama, JD van Elsas Scientific Reports 7 (1), 9156, 2017 | 16 | 2017 |
| Delineation of a Subgroup of the Genus Paraburkholderia, Including P. terrae DSM 17804T, P. hospita DSM 17164T, and Four Soil-Isolated Fungiphiles, Reveals … AA Pratama, DJ Jiménez, Q Chen, B Bunk, C Spröer, J Overmann, ... Genome biology and evolution 12 (4), 325-344, 2020 | 15 | 2020 |
| Draft genome sequences of three fungal-interactive Paraburkholderia terrae strains, BS007, BS110 and BS437 AA Pratama, IU Haq, R Nazir, M Chaib De Mares, JD van Elsas Standards in Genomic Sciences 12, 1-14, 2017 | 6 | 2017 |
| The Viruses in Soil—Potential Roles, Activities, and Impacts AA Pratama, JD Van Elsas Modern Soil Microbiology, Third Edition, 91-104, 2019 | 3 | 2019 |
| MArVD2: a machine learning enhanced tool to discriminate between archaeal and bacterial viruses in viral datasets D Vik, B Bolduc, S Roux, CL Sun, AA Pratama, M Krupovic, MB Sullivan ISME communications 3 (1), 87, 2023 | 2 | 2023 |
| Unraveling the viral dark matter of the rumen microbiome with a new global virome database M Yan, AA Pratama, Z Li, Y Jiang, MB Sullivan, Z Yu bioRxiv, 2022.11. 30.518432, 2022 | 1 | 2022 |
| The ecology and evolution of bacteriophages of mycosphere-inhabiting Paraburkholderia spp. AA Pratama | 1 | 2018 |
| The role of viruses in the carbon cycle along a permafrost thaw gradient CL Sun, AA Pratama, C Gazitua, AA Zayed, DR Cronin, LM Solden, ... AGU Fall Meeting Abstracts 2020, B111-0009, 2020 | | 2020 |
| Towards Standards in Viromics: in silico Evaluation of Viral Identification, Taxonomy, and Auxiliary Metabolic Genes (AMGs) Curation AA Pratama, B Bolduc, AA Zayed, S Roux, MB Sullivan AGU Fall Meeting Abstracts 2020, B111-0002, 2020 | | 2020 |
