RNA-Seq differential expression analysis: An extended review and a software tool J Costa-Silva, D Domingues, FM Lopes PloS one 12 (12), e0190152, 2017 | 690 | 2017 |
Physiological responses to drought, salinity, and heat stress in plants: a review TB Dos Santos, AF Ribas, SGH de Souza, IGF Budzinski, DS Domingues Stresses 2 (1), 113-135, 2022 | 236 | 2022 |
The accumulation of endogenous proline induces changes in gene expression of several antioxidant enzymes in leaves of transgenic Swingle citrumelo K de Carvalho, MKF de Campos, DS Domingues, LFP Pereira, LGE Vieira Molecular Biology Reports 40, 3269-3279, 2013 | 194 | 2013 |
Nitric oxide mediates the hormonal control of Crassulacean acid metabolism expression in young pineapple plants L Freschi, MA Rodrigues, DS Domingues, E Purgatto, MA Van Sluys, ... Plant physiology 152 (4), 1971-1985, 2010 | 103 | 2010 |
The biotechnology roadmap for sugarcane improvement CT Hotta, CG Lembke, DS Domingues, EA Ochoa, GMQ Cruz, ... Tropical Plant Biology 3, 75-87, 2010 | 97 | 2010 |
Stress-induced Δ1-pyrroline-5-carboxylate synthetase (P5CS) gene confers tolerance to salt stress in transgenic sugarcane JTS Guerzoni, NG Belintani, RMP Moreira, AA Hoshino, DS Domingues, ... Acta Physiologiae Plantarum 36, 2309-2319, 2014 | 79 | 2014 |
Analysis of plant LTR-retrotransposons at the fine-scale family level reveals individual molecular patterns DS Domingues, GMQ Cruz, CJ Metcalfe, FTS Nogueira, R Vicentini, ... BMC genomics 13, 1-14, 2012 | 76 | 2012 |
Genome-wide association study reveals candidate genes influencing lipids and diterpenes contents in Coffea arabica L GC Sant’Ana, LFP Pereira, D Pot, ST Ivamoto, DS Domingues, ... Scientific reports 8 (1), 465, 2018 | 74 | 2018 |
Pattern recognition analysis on long noncoding RNAs: a tool for prediction in plants TC Negri, WAL Alves, PH Bugatti, PTM Saito, DS Domingues, ... Briefings in bioinformatics 20 (2), 682-689, 2019 | 60 | 2019 |
MathFeature: feature extraction package for DNA, RNA and protein sequences based on mathematical descriptors RP Bonidia, DS Domingues, DS Sanches, AC de Carvalho Briefings in bioinformatics 23 (1), bbab434, 2022 | 52 | 2022 |
Galactinol synthase transcriptional profile in two genotypes of Coffea canephora with contrasting tolerance to drought TBD Santos, RB Lima, GT Nagashima, CLO Petkowicz, ... Genetics and Molecular Biology 38, 182-190, 2015 | 51 | 2015 |
Nitrogen Starvation, Salt and Heat Stress in Coffee (Coffea arabica L.): Identification and Validation of New Genes for qPCR Normalization K de Carvalho, JC Bespalhok Filho, TB Dos Santos, SGH de Souza, ... Molecular biotechnology 53, 315-325, 2013 | 51 | 2013 |
A novel linkage map of sugarcane with evidence for clustering of retrotransposon-based markers AC Palhares, TB Rodrigues-Morais, MA Van Sluys, DS Domingues, ... Bmc Genetics 13, 1-16, 2012 | 50 | 2012 |
NCED expression is related to increased ABA biosynthesis and stomatal closure under aluminum stress MA Gavassi, GS Silva, CMS da Silva, AJ Thompson, K Macleod, ... Environmental and Experimental Botany 185, 104404, 2021 | 49 | 2021 |
Transcriptome Analysis of Leaves, Flowers and Fruits Perisperm of Coffea arabica L. Reveals the Differential Expression of Genes Involved in Raffinose Biosynthesis ST Ivamoto, O Reis, DS Domingues, TB Dos Santos, FF De Oliveira, D Pot, ... PloS one 12 (1), e0169595, 2017 | 47 | 2017 |
PlanTE-MIR DB: a database for transposable element-related microRNAs in plant genomes AP R. Lorenzetti, GY A. de Antonio, AR Paschoal, DS Domingues Functional & integrative genomics 16, 235-242, 2016 | 43 | 2016 |
Transcriptome analysis in Coffea eugenioides, an Arabica coffee ancestor, reveals differentially expressed genes in leaves and fruits PM Yuyama, O Reis Junior, ST Ivamoto, DS Domingues, MF Carazzolle, ... Molecular Genetics and Genomics 291, 323-336, 2016 | 41 | 2016 |
TERL: classification of transposable elements by convolutional neural networks MHP da Cruz, DS Domingues, PTM Saito, AR Paschoal, PH Bugatti Briefings in bioinformatics 22 (3), bbaa185, 2021 | 38 | 2021 |
Feature extraction approaches for biological sequences: a comparative study of mathematical features RP Bonidia, LDH Sampaio, DS Domingues, AR Paschoal, FM Lopes, ... Briefings in Bioinformatics 22 (5), bbab011, 2021 | 36 | 2021 |
Homeologous genes involved in mannitol synthesis reveal unequal contributions in response to abiotic stress in Coffea arabica K de Carvalho, CLO Petkowicz, GT Nagashima, JC Bespalhok Filho, ... Molecular genetics and genomics 289, 951-963, 2014 | 35 | 2014 |