Massively multiplex single-cell Hi-C V Ramani, X Deng, R Qiu, KL Gunderson, FJ Steemers, CM Disteche, ... Nature methods 14 (3), 263-266, 2017 | 542 | 2017 |
Derivation of naive human embryonic stem cells CB Ware, AM Nelson, B Mecham, J Hesson, W Zhou, EC Jonlin, ... Proceedings of the National Academy of Sciences 111 (12), 4484-4489, 2014 | 539 | 2014 |
X chromosome regulation: diverse patterns in development, tissues and disease X Deng, JB Berletch, DK Nguyen, CM Disteche Nature Reviews Genetics 15 (6), 367-378, 2014 | 326 | 2014 |
Evidence for compensatory upregulation of expressed X-linked genes in mammals, Caenorhabditis elegans and Drosophila melanogaster X Deng, JB Hiatt, DK Nguyen, S Ercan, D Sturgill, LDW Hillier, ... Nature genetics 43 (12), 1179-1185, 2011 | 292 | 2011 |
Escape from X inactivation varies in mouse tissues JB Berletch, W Ma, F Yang, J Shendure, WS Noble, CM Disteche, X Deng PLoS genetics 11 (3), e1005079, 2015 | 275 | 2015 |
The lncRNA Firre anchors the inactive X chromosome to the nucleolus by binding CTCF and maintains H3K27me3 methylation F Yang, X Deng, W Ma, JB Berletch, N Rabaia, G Wei, JM Moore, ... Genome biology 16, 1-17, 2015 | 258 | 2015 |
Bipartite structure of the inactive mouse X chromosome X Deng, W Ma, V Ramani, A Hill, F Yang, F Ay, JB Berletch, CA Blau, ... Genome biology 16, 1-21, 2015 | 236 | 2015 |
Fine-scale chromatin interaction maps reveal the cis-regulatory landscape of human lincRNA genes W Ma, F Ay, C Lee, G Gulsoy, X Deng, S Cook, J Hesson, C Cavanaugh, ... Nature methods 12 (1), 71-78, 2015 | 215 | 2015 |
Sex-specific differences in expression of histone demethylases Utx and Uty in mouse brain and neurons J Xu, X Deng, R Watkins, CM Disteche Journal of Neuroscience 28 (17), 4521-4527, 2008 | 190 | 2008 |
Sex-Specific Expression of the X-Linked Histone Demethylase Gene Jarid1c in Brain J Xu, X Deng, CM Disteche PloS one 3 (7), e2553, 2008 | 143 | 2008 |
Mapping 3D genome architecture through in situ DNase Hi-C V Ramani, DA Cusanovich, RJ Hause, W Ma, R Qiu, X Deng, CA Blau, ... Nature protocols 11 (11), 2104-2121, 2016 | 118 | 2016 |
roX RNAs Are Required for Increased Expression of X-Linked Genes in Drosophila melanogaster Males X Deng, VH Meller Genetics 174 (4), 1859-1866, 2006 | 106 | 2006 |
Mammalian X upregulation is associated with enhanced transcription initiation, RNA half-life, and MOF-mediated H4K16 acetylation X Deng, JB Berletch, W Ma, JB Hiatt, WS Noble, J Shendure, CM Disteche Developmental cell 25 (1), 55-68, 2013 | 101 | 2013 |
Non-coding RNA in fly dosage compensation X Deng, VH Meller Trends in biochemical sciences 31 (9), 526-532, 2006 | 75 | 2006 |
Orientation-dependent Dxz4 contacts shape the 3D structure of the inactive X chromosome G Bonora, X Deng, H Fang, V Ramani, R Qiu, JB Berletch, GN Filippova, ... Nature communications 9 (1), 1445, 2018 | 73 | 2018 |
Sci-Hi-C: a single-cell Hi-C method for mapping 3D genome organization in large number of single cells V Ramani, X Deng, R Qiu, C Lee, CM Disteche, WS Noble, J Shendure, ... Methods 170, 61-68, 2020 | 71 | 2020 |
The severity of roX1 mutations is predicted by MSL localization on the X chromosome X Deng, BP Rattner, S Souter, VH Meller Mechanisms of development 122 (10), 1094-1105, 2005 | 56 | 2005 |
Female Bias in Rhox6 and 9 Regulation by the Histone Demethylase KDM6A JB Berletch, X Deng, DK Nguyen, CM Disteche PLoS genetics 9 (5), e1003489, 2013 | 54 | 2013 |
Trans- and cis-acting effects of Firre on epigenetic features of the inactive X chromosome H Fang, G Bonora, JP Lewandowski, J Thakur, GN Filippova, S Henikoff, ... Nature communications 11 (1), 6053, 2020 | 52 | 2020 |
Unsupervised manifold alignment for single-cell multi-omics data R Singh, P Demetci, G Bonora, V Ramani, C Lee, H Fang, Z Duan, ... Proceedings of the 11th ACM International Conference on Bioinformatics …, 2020 | 52 | 2020 |