关注
Yufei Huang
Yufei Huang
Zhejiang University&Westlake University
在 westlake.edu.cn 的电子邮件经过验证
标题
引用次数
引用次数
年份
Diffbp: Generative diffusion of 3d molecules for target protein binding
H Lin, Y Huang, M Liu, X Li, S Ji, SZ Li
arXiv preprint arXiv:2211.11214, 2022
572022
Knowledge distillation improves graph structure augmentation for graph neural networks
L Wu, H Lin, Y Huang, SZ Li
Advances in Neural Information Processing Systems 35, 11815-11827, 2022
432022
Quantifying the Knowledge in GNNs for Reliable Distillation into MLPs
L Wu, H Lin, Y Huang, SZ Li
ICML2023, 2023
242023
Extracting Low-/High-Frequency Knowledge from Graph Neural Networks and Injecting it into MLPs: An Effective GNN-to-MLP Distillation Framework
L Wu, H Lin, Y Huang, T Fan, SZ Li
AAAI 2023, 2023
212023
Protein language models and structure prediction: Connection and progression
B Hu, J Xia, J Zheng, C Tan, Y Huang, Y Xu, SZ Li
arXiv preprint arXiv:2211.16742, 2022
192022
Using Context-to-Vector with Graph Retrofitting to Improve Word Embeddings
J Zheng, Y Wang, G Wang, J Xia, Y Huang, G Zhao, Y Zhang, SZ Li
ACL 2022, 2022
172022
Homophily-Enhanced Self-supervision for Graph Structure Learning: Insights and Directions
L Wu, H Lin, Y Huang, SZ Li
IEEE TNNLS, 2023
152023
Mape-ppi: Towards effective and efficient protein-protein interaction prediction via microenvironment-aware protein embedding
L Wu, Y Tian, Y Huang, S Li, H Lin, NV Chawla, SZ Li
arXiv preprint arXiv:2402.14391, 2024
112024
Functional-Group-Based Diffusion for Pocket-Specific Molecule Generation and Elaboration
H Lin, Y Huang, H Zhang, L Wu, S Li, Z Chen, SZ Li
Neurips 2023, 2023
112023
Data-efficient protein 3d geometric pretraining via refinement of diffused protein structure decoy
Y Huang, L Wu, H Lin, J Zheng, G Wang, SZ Li
arXiv preprint arXiv:2302.10888, 2023
102023
Learning complete protein representation by deep coupling of sequence and structure
B Hu, C Tan, J Xia, J Zheng, Y Huang, L Wu, Y Liu, Y Xu, SZ Li
bioRxiv, 2023.07. 05.547769, 2023
92023
Protein 3D Graph Structure Learning for Robust Structure-based Protein Property Prediction
Y Huang, S Li, J Su, L Wu, O Zhang, H Lin, J Qi, Z Liu, Z Gao, Y Liu, ...
AAAI 2024, 2023
72023
Psc-cpi: Multi-scale protein sequence-structure contrasting for efficient and generalizable compound-protein interaction prediction
L Wu, Y Huang, C Tan, Z Gao, B Hu, H Lin, Z Liu, SZ Li
Proceedings of the AAAI Conference on Artificial Intelligence 38 (1), 310-319, 2024
62024
A survey on protein representation learning: Retrospect and prospect
L Wu, Y Huang, H Lin, SZ Li
arXiv preprint arXiv:2301.00813, 2022
52022
Non-equispaced fourier neural solvers for pdes
H Lin, L Wu, Y Xu, Y Huang, S Li, G Zhao, SZ Li
arXiv preprint arXiv:2212.04689, 2022
52022
Uniif: Unified molecule inverse folding
Z Gao, J Wang, C Tan, L Wu, Y Huang, S Li, Z Ye, SZ Li
arXiv preprint arXiv:2405.18968, 2024
42024
Lightweight contrastive protein structure-sequence transformation
J Zheng, G Wang, Y Huang, B Hu, S Li, C Tan, X Fan, SZ Li
arXiv preprint arXiv:2303.11783, 2023
42023
Automated graph self-supervised learning via multi-teacher knowledge distillation
L Wu, Y Huang, H Lin, Z Liu, T Fan, SZ Li
arXiv preprint arXiv:2210.02099, 2022
42022
Deep geometry handling and fragment-wise molecular 3d graph generation
O Zhang, Y Huang, S Cheng, M Yu, X Zhang, H Lin, Y Zeng, M Wang, ...
arXiv preprint arXiv:2404.00014, 2024
32024
Foldtoken: Learning protein language via vector quantization and beyond
Z Gao, C Tan, J Wang, Y Huang, L Wu, SZ Li
arXiv preprint arXiv:2403.09673, 2024
32024
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