| CHARMM: the biomolecular simulation program BR Brooks, CL Brooks III, AD Mackerell Jr, L Nilsson, RJ Petrella, B Roux, ... Journal of computational chemistry 30 (10), 1545-1614, 2009 | 8768 | 2009 |
| CHARMM‐GUI: a web‐based graphical user interface for CHARMM S Jo, T Kim, VG Iyer, W Im Journal of computational chemistry 29 (11), 1859-1865, 2008 | 6336 | 2008 |
| CHARMM-GUI input generator for NAMD, GROMACS, AMBER, OpenMM, and CHARMM/OpenMM simulations using the CHARMM36 additive force field J Lee, X Cheng, S Jo, AD MacKerell, JB Klauda, W Im Biophysical journal 110 (3), 641a, 2016 | 2984 | 2016 |
| CHARMM‐GUI Membrane Builder toward realistic biological membrane simulations EL Wu, X Cheng, S Jo, H Rui, KC Song, EM Dávila‐Contreras, Y Qi, J Lee, ... Journal of computational chemistry 35 (27), 1997-2004, 2014 | 2008 | 2014 |
| CHARMM-GUI Membrane Builder for mixed bilayers and its application to yeast membranes S Jo, JB Lim, JB Klauda, W Im Biophysical journal 97 (1), 50-58, 2009 | 1520 | 2009 |
| Automated builder and database of protein/membrane complexes for molecular dynamics simulations S Jo, T Kim, W Im PloS one 2 (9), e880, 2007 | 1075 | 2007 |
| Generalized born model with a simple smoothing function W Im, MS Lee, CL Brooks III Journal of computational chemistry 24 (14), 1691-1702, 2003 | 786 | 2003 |
| Performance comparison of generalized born and Poisson methods in the calculation of electrostatic solvation energies for protein structures M Feig, A Onufriev, MS Lee, W Im, DA Case, CL Brooks III Journal of computational chemistry 25 (2), 265-284, 2004 | 722 | 2004 |
| Continuum solvation model: computation of electrostatic forces from numerical solutions to the Poisson-Boltzmann equation W Im, D Beglov, B Roux Computer physics communications 111 (1-3), 59-75, 1998 | 657 | 1998 |
| Theoretical and computational models of biological ion channels B Roux, T Allen, S Berneche, W Im Quarterly reviews of biophysics 37 (1), 15-103, 2004 | 479 | 2004 |
| Ion permeation and selectivity of OmpF porin: a theoretical study based on molecular dynamics, Brownian dynamics, and continuum electrodiffusion theory W Im, B Roux Journal of molecular biology 322 (4), 851-869, 2002 | 463 | 2002 |
| An implicit membrane generalized born theory for the study of structure, stability, and interactions of membrane proteins W Im, M Feig, CL Brooks Biophysical journal 85 (5), 2900-2918, 2003 | 462 | 2003 |
| CHARMM-GUI Membrane Builder for Complex Biological Membrane Simulations with Glycolipids and Lipoglycans J Lee, DS Patel, J Ståhle, SJ Park, NR Kern, S Kim, J Lee, X Cheng, ... Journal of chemical theory and computation 15 (1), 775-786, 2018 | 425 | 2018 |
| CHARMM-GUI martini maker for coarse-grained simulations with the martini force field Y Qi, HI Ingólfsson, X Cheng, J Lee, SJ Marrink, W Im Journal of chemical theory and computation 11 (9), 4486-4494, 2015 | 399 | 2015 |
| Balancing solvation and intramolecular interactions: toward a consistent generalized Born force field J Chen, W Im, CL Brooks Journal of the American Chemical Society 128 (11), 3728-3736, 2006 | 394 | 2006 |
| CHARMM‐GUI ligand reader and modeler for CHARMM force field generation of small molecules S Kim, J Lee, S Jo, CL Brooks III, HS Lee, W Im Journal of computational chemistry 38 (21), 1879-1886, 2017 | 383 | 2017 |
| Ions and counterions in a biological channel: a molecular dynamics simulation of OmpF porin from Escherichia coli in an explicit membrane with 1 M KCl aqueous salt solution W Im, B Roux Journal of molecular biology 319 (5), 1177-1197, 2002 | 318 | 2002 |
| A grand canonical Monte Carlo–Brownian dynamics algorithm for simulating ion channels W Im, S Seefeld, B Roux Biophysical Journal 79 (2), 788-801, 2000 | 293 | 2000 |
| Effects of N-glycosylation on protein conformation and dynamics: Protein Data Bank analysis and molecular dynamics simulation study HS Lee, Y Qi, W Im Scientific reports 5 (1), 1-7, 2015 | 284 | 2015 |
| CHARMM‐GUI 10 years for biomolecular modeling and simulation S Jo, X Cheng, J Lee, S Kim, SJ Park, DS Patel, AH Beaven, KI Lee, H Rui, ... Journal of computational chemistry 38 (15), 1114-1124, 2017 | 276 | 2017 |
