microbiomeSeq: an R package for microbial community analysis in an environmental context A Ssekagiri, WT Sloan, UZ Ijaz ISCB Africa ASBCB conference, 2018 | 110* | 2018 |
Phylogenetic and demographic characterization of directed HIV-1 transmission using deep sequences from high-risk and general population cohorts/groups in Uganda N Bbosa, D Ssemwanga, A Ssekagiri, X Xi, Y Mayanja, U Bahemuka, ... Viruses 12 (3), 331, 2020 | 17 | 2020 |
Rapid replacement of SARS-CoV-2 variants by delta and subsequent arrival of Omicron, Uganda, 2021 N Bbosa, D Ssemwanga, H Namagembe, R Kiiza, J Kiconco, J Kayiwa, ... Emerging Infectious Diseases 28 (5), 1021, 2022 | 12 | 2022 |
Diverse vaginal microbiome was associated with pro-inflammatory vaginal milieu among pregnant women in Uganda L Bayigga, R Nabatanzi, A Ssekagiri, DP Kateete, M Sekikubo, ... Human Microbiome Journal 18, 100076, 2020 | 11 | 2020 |
H3ABioNet genomic medicine and microbiome data portals hackathon proceedings FM Fadlelmola, K Ghedira, Y Hamdi, M Hanachi, F Radouani, I Allali, ... Database 2021, baab016, 2021 | 10 | 2021 |
Phylogenetic Networks and Parameters Inferred from HIV Nucleotide Sequences of High-Risk and General Population Groups in Uganda: Implications for Epidemic Control B Nicholas, S Deogratius, NN Rebecca, K Noah, SB Bernard, MK John, ... Viruses 13 (6), 2021 | 6* | 2021 |
Circulating levels of angiogenic factors and their association with preeclampsia among pregnant women at Mulago National Referral Hospital in Uganda N Sheila, S Obondo, James, N McGovern, B Freddie, S Alfred, K Annette, ... PLOS ONE 16 (5), e0251227, 2021 | 6 | 2021 |
Emerging viruses are an underestimated cause of undiagnosed febrile illness in Uganda S Ashraf, H Jerome, C Davis, J Shepherd, S Vattipally, A Filipe, ... International Journal of Infectious Diseases 130, S17, 2023 | 5 | 2023 |
Employing phylogenetic tree shape statistics to resolve the underlying host population structure WK Hassan, S Alfred, N Grace, B Nicholas, S Deogratius, K Pontiano, ... BMC Bioinformatics 22 (564), 2021 | 5 | 2021 |
Mosquito-borne arboviruses in Uganda: history, transmission and burden MN Mayanja, FN Mwiine, JJ Lutwama, A Ssekagiri, M Egesa, ... Journal of General Virology 102 (6), 001615, 2021 | 5 | 2021 |
The molecular epidemiology and transmission dynamics of HIV type 1 in a general population cohort in Uganda D Ssemwanga, N Bbosa, RN Nsubuga, A Ssekagiri, A Kapaata, ... Viruses 12 (11), 1283, 2020 | 4 | 2020 |
Mosquito virus diversity in Western and North-western Uganda MN Mayanja, M Niebel, S Ashraf, M Hardy, A Ssekagiri, L Tong, ... bioRxiv, 2023.11. 02.565349, 2023 | 1 | 2023 |
African Genomic Medicine Portal: A Web Portal for Biomedical Applications H Othman, L Zass, JEB da Rocha, F Radouani, C Samtal, I Benamri, ... Journal of Personalized Medicine 12 (2), 265, 2022 | 1 | 2022 |
QuasiFlow: a Nextflow pipeline for analysis of NGS-based HIV-1 drug resistance data A Ssekagiri, D Jjingo, I Lujumba, N Bbosa, DL Bugembe, DP Kateete, ... Bioinformatics advances 2 (1), vbac089, 2022 | 1 | 2022 |
Sequence Notes: Near Full-Length Genome Analysis of the First-Reported HIV-1 Circulating Recombinant Form (CRF) _10CD in Uganda N Bbosa, V Holzmayer, D Ssemwanga, R Downing, A Ssekagiri, ... AIDS Research and Human Retroviruses, 2024 | | 2024 |
Viruses associated with measles-like illnesses in Uganda P Namuwulya, S Ashraf, M Niebel, A Ssekagiri, P Tushabe, P Kakooza, ... Journal of Infection 88 (5), 106148, 2024 | | 2024 |
HIVseqDB: a portable resource for NGS and sample metadata integration for HIV-1 drug resistance analysis A Ssekagiri, D Jjingo, N Bbosa, DL Bugembe, DP Kateete, IK Jordan, ... Bioinformatics Advances 4 (1), vbae008, 2024 | | 2024 |
No association of a Vascular endothelial growth factor A (VEGFA) gene polymorphism with pre-eclampsia among pregnant women in Uganda S Nabweyambo, S Kanyerezi, JHO Petterson, FA Katabazi, A Ssekagiri, ... BMC genomics 24 (1), 132, 2023 | | 2023 |
Ticks; a reservoir for virus emergence at the human-livestock interface in Uganda SA Atim, S Ashraf, M Niebel, A Ssekagiri, MN Hardy, JG Shepherd, ... bioRxiv, 2023.03. 10.532017, 2023 | | 2023 |
Near full-length genome analysis of the first-reported HIV-1 Circulating Recombinant Form (CRF) _10CD in Uganda N Bbosa, V Holzmayer, D Ssemwanga, R Downing, A Ssekagiri, ... AIDS research and human retroviruses, 0 | | |