WebGestalt: an integrated system for exploring gene sets in various biological contexts B Zhang, S Kirov, J Snoddy Nucleic acids research 33 (suppl_2), W741-W748, 2005 | 1904 | 2005 |
WebGestalt 2019: gene set analysis toolkit with revamped UIs and APIs Y Liao, J Wang, EJ Jaehnig, Z Shi, B Zhang Nucleic acids research 47 (W1), W199-W205, 2019 | 1784 | 2019 |
WEB-based GEne SeT AnaLysis Toolkit (WebGestalt): update 2013 J Wang, D Duncan, Z Shi, B Zhang Nucleic acids research 41 (W1), W77-W83, 2013 | 1653 | 2013 |
Proteogenomics connects somatic mutations to signalling in breast cancer P Mertins, M DR, R KV, G MA, C KR, W P, W X, Q JW, C S, P F, K E, M F, ... Nature 534 (7605), 55-62, 2016 | 1376 | 2016 |
LinkedOmics: analyzing multi-omics data within and across 32 cancer types SV Vasaikar, P Straub, J Wang, B Zhang Nucleic acids research 46 (D1), D956-D963, 2018 | 1364 | 2018 |
Proteogenomic characterization of human colon and rectal cancer B Zhang, J Wang, X Wang, J Zhu, Q Liu, Z Shi, MC Chambers, ... Nature 513 (7518), 382-387, 2014 | 1294 | 2014 |
WebGestalt 2017: a more comprehensive, powerful, flexible and interactive gene set enrichment analysis toolkit J Wang, S Vasaikar, Z Shi, M Greer, B Zhang Nucleic acids research 45 (W1), W130-W137, 2017 | 893 | 2017 |
Integrated proteogenomic characterization of human high-grade serous ovarian cancer H Zhang, T Liu, Z Zhang, SH Payne, B Zhang, JE McDermott, JY Zhou, ... Cell 166 (3), 755-765, 2016 | 786 | 2016 |
Experimentally derived metastasis gene expression profile predicts recurrence and death in patients with colon cancer JJ Smith, NG Deane, F Wu, NB Merchant, B Zhang, A Jiang, P Lu, ... Gastroenterology 138 (3), 958-968, 2010 | 629 | 2010 |
How many human proteoforms are there? R Aebersold, JN Agar, IJ Amster, MS Baker, CR Bertozzi, ES Boja, ... Nature chemical biology 14 (3), 206-214, 2018 | 604 | 2018 |
GOTree Machine (GOTM): a web-based platform for interpreting sets of interesting genes using Gene Ontology hierarchies B Zhang, D Schmoyer, S Kirov, J Snoddy BMC bioinformatics 5 (1), 16, 2004 | 549 | 2004 |
Integrated Proteogenomic Characterization of HBV-Related Hepatocellular Carcinoma Q Gao, H Zhu, L Dong, W Shi, R Chen, Z Song, C Huang, J Li, X Dong, ... Cell 179 (2), 561-577. e22, 2019 | 543 | 2019 |
Elevated NRAS expression during DCIS is a potential driver for progression to basal-like properties and local invasiveness ZY Zheng, H Elsarraj, JT Lei, Y Hong, M Anurag, L Feng, H Kennedy, ... Breast Cancer Research 24 (1), 1-11, 2022 | 531 | 2022 |
Detecting differential and correlated protein expression in label-free shotgun proteomics B Zhang, NC VerBerkmoes, MA Langston, E Uberbacher, RL Hettich, ... Journal of proteome research 5 (11), 2909-2918, 2006 | 473 | 2006 |
Proteogenomic analysis of human colon cancer reveals new therapeutic opportunities S Vasaikar, C Huang, X Wang, VA Petyuk, SR Savage, B Wen, Y Dou, ... Cell 177 (4), 1035-1049. e19, 2019 | 450 | 2019 |
Proteomic parsimony through bipartite graph analysis improves accuracy and transparency B Zhang, MC Chambers, DL Tabb Journal of proteome research 6 (9), 3549-3557, 2007 | 381 | 2007 |
KRAS-dependent sorting of miRNA to exosomes DJ Cha, JL Franklin, Y Dou, Q Liu, JN Higginbotham, MD Beckler, ... Elife 4, e07197, 2015 | 329 | 2015 |
Integrated proteogenomic characterization of clear cell renal cell carcinoma DJ Clark, SM Dhanasekaran, F Petralia, J Pan, X Song, Y Hu, ... Cell 179 (4), 964-983. e31, 2019 | 325 | 2019 |
Proteogenomic characterization reveals therapeutic vulnerabilities in lung adenocarcinoma MA Gillette, S Satpathy, S Cao, SM Dhanasekaran, SV Vasaikar, K Krug, ... Cell 182 (1), 200-225. e35, 2020 | 315 | 2020 |
Circular RNAs are down-regulated in KRAS mutant colon cancer cells and can be transferred to exosomes JGPBZ Yongchao Dou, Diana J. Cha, Jeffrey L. Franklin, James N. Higginbotham ... Scientific Reports 6, 2016 | 285 | 2016 |