| Rate-limiting steps in yeast protein translation P Shah, Y Ding, M Niemczyk, G Kudla, JB Plotkin Cell 153 (7), 1589-1601, 2013 | 528 | 2013 |
| Improved ribosome-footprint and mRNA measurements provide insights into dynamics and regulation of yeast translation DE Weinberg*, P Shah*, SW Eichhorn, JA Hussmann, JB Plotkin, ... Cell Reports 14 (7), 1787-1799, 2016 | 406 | 2016 |
| Non-optimal codon usage is a mechanism to achieve circadian clock conditionality Y Xu, P Ma, P Shah, A Rokas, Y Liu, CH Johnson Nature 495, 116-120, 2013 | 194 | 2013 |
| Contingency and entrenchment in protein evolution under purifying selection P Shah*, DM McCandlish*, JB Plotkin PNAS 112 (25), E3226-E3235, 2015 | 176 | 2015 |
| Explaining complex codon usage patterns with selection for translational efficiency, mutation bias, and genetic drift P Shah, MA Gilchrist PNAS 108 (25), 10231, 2011 | 169 | 2011 |
| Effect of correlated tRNA abundances on translation errors and evolution of codon usage bias P Shah, MA Gilchrist PLoS Genetics 6 (9), e1001128, 2010 | 126 | 2010 |
| Evidence for repeated loss of selective constraint in rhodopsin of amblyopsid cavefishes (Teleostei: Amblyopsidae) ML Niemiller, BM Fitzpatrick, P Shah, L Schmitz, TJ Near Evolution 67 (3), 732-748, 2013 | 98 | 2013 |
| A tRNA modification balances carbon and nitrogen metabolism by regulating phosphate homeostasis R Gupta, AS Walvekar, S Liang, Z Rashida, P Shah‡, S Laxman‡ eLife 8, 2019 | 65 | 2019 |
| The role of epistasis in protein evolution DM McCandlish, E Rajon, P Shah, Y Ding, JB Plotkin Nature 497 (7451), E1-E2, 2013 | 59 | 2013 |
| Epistasis and the dynamics of reversion in molecular evolution DM McCandlish, P Shah, JB Plotkin Genetics, 116.188961, 2016 | 57 | 2016 |
| Estimating gene expression and codon-specific translational efficiencies, mutation biases, and selection coefficients from genomic data alone MA Gilchrist, WC Chen, P Shah, CL Landerer, R Zaretzki Genome biology and evolution 7 (6), 1559-1579, 2015 | 47 | 2015 |
| Riboviz: analysis and visualization of ribosome profiling datasets O Carja, T Xing, EWJ Wallace, JB Plotkin, P Shah BMC bioinformatics 18, 1-4, 2017 | 38 | 2017 |
| Measuring and detecting molecular adaptation in codon usage against nonsense errors during protein translation MA Gilchrist, P Shah, R Zaretzki Genetics 183 (4), 1493-1505, 2009 | 35 | 2009 |
| Isolation, profiling, and tracking of extracellular vesicle cargo in Caenorhabditis elegans IA Nikonorova, J Wang, AL Cope, PE Tilton, KM Power, JD Walsh, ... Current Biology 32 (9), 1924-1936. e6, 2022 | 34 | 2022 |
| Posttranscriptional regulation of colonic epithelial repair by RNA binding protein IMP 1/IGF 2 BP 1 P Chatterji, PA Williams, KA Whelan, FC Samper, SF Andres, LA Simon, ... EMBO reports 20 (6), e47074, 2019 | 31 | 2019 |
| Weak 5′-mRNA secondary structures in short eukaryotic genes Y Ding, P Shah, JB Plotkin Genome Biology and Evolution 4 (10), 1046-1053, 2012 | 29 | 2012 |
| O-GlcNAcylation alters the selection of mRNAs for translation and promotes 4E-BP1-dependent mitochondrial dysfunction in retina SK Dierschke, WP Miller, JS Favate, P Shah, YI Kawasawa, AC Salzberg, ... Journal of Biological Chemistry 294 (14), 5508 - 5520, 2019 | 26 | 2019 |
| The landscape of transcriptional and translational changes over 22 years of bacterial adaptation JS Favate, S Liang, AL Cope, SS Yadavalli, P Shah eLife 11, e81979, 2022 | 22 | 2022 |
| XACT-seq comprehensively defines the promoter-position and promoter-sequence determinants for initial-transcription pausing JT Winkelman, C Pukhrambam, IO Vvedenskaya, Y Zhang, DM Taylor, ... Molecular cell 79 (5), 797-811. e8, 2020 | 22 | 2020 |
| The LIN28B–IMP1 post-transcriptional regulon has opposing effects on oncogenic signaling in the intestine P Chatterji, KE Hamilton, S Liang, SF Andres, HRS Wijeratne, R Mizuno, ... Genes & development 32 (15-16), 1020-1034, 2018 | 22 | 2018 |
Joshua B. PlotkinAnnenberg Professor of the Natural Sciences, University of Pennsylvania在 sas.upenn.edu 的电子邮件经过验证
