| An integrated encyclopedia of DNA elements in the human genome ENCODE Project Consortium Nature 489 (7414), 57, 2012 | 16930 | 2012 |
| A Protein Interaction Map of Drosophila melanogaster L Giot, JS Bader, C Brouwer, A Chaudhuri, B Kuang, Y Li, YL Hao, CE Ooi, ... science 302 (5651), 1727-1736, 2003 | 2888 | 2003 |
| ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia SG Landt, GK Marinov, A Kundaje, P Kheradpour, F Pauli, S Batzoglou, ... Genome research 22 (9), 1813-1831, 2012 | 2266 | 2012 |
| Expanded encyclopaedias of DNA elements in the human and mouse genomes JE Moore, MJ Purcaro, HE Pratt, CB Epstein, N Shoresh, J Adrian, T Kawli, ... Nature 583 (7818), 699-710, 2020 | 1319 | 2020 |
| Gene expression during the life cycle of Drosophila melanogaster MN Arbeitman, EEM Furlong, F Imam, E Johnson, BH Null, BS Baker, ... Science 297 (5590), 2270-2275, 2002 | 1094 | 2002 |
| Identification of Functional Elements and Regulatory Circuits by Drosophila modENCODE modENCODE Consortium, S Roy, J Ernst, PV Kharchenko, P Kheradpour, ... Science 330 (6012), 1787-1797, 2010 | 1088 | 2010 |
| Transcriptome-wide isoform-level dysregulation in ASD, schizophrenia, and bipolar disorder MJ Gandal, P Zhang, E Hadjimichael, RL Walker, C Chen, S Liu, H Won, ... Science 362 (6420), eaat8127, 2018 | 1070 | 2018 |
| Shared molecular neuropathology across major psychiatric disorders parallels polygenic overlap MJ Gandal, JR Haney, NN Parikshak, V Leppa, G Ramaswami, C Hartl, ... Science 359 (6376), 693-697, 2018 | 1011 | 2018 |
| Unlocking the secrets of the genome SE Celniker, LAL Dillon, MB Gerstein, KC Gunsalus, S Henikoff, ... Nature 459 (7249), 927-930, 2009 | 971 | 2009 |
| Defining functional DNA elements in the human genome M Kellis, B Wold, MP Snyder, BE Bernstein, A Kundaje, GK Marinov, ... Proceedings of the National Academy of Sciences 111 (17), 6131-6138, 2014 | 874 | 2014 |
| A user's guide to the encyclopedia of DNA elements (ENCODE) ENCODE Project Consortium PLoS biology 9 (4), e1001046, 2011 | 861 | 2011 |
| Comprehensive functional genomic resource and integrative model for the human brain D Wang, S Liu, J Warrell, H Won, X Shi, FCP Navarro, D Clarke, M Gu, ... Science 362 (6420), eaat8464, 2018 | 858 | 2018 |
| The contributions of sex, genotype and age to transcriptional variance in Drosophila melanogaster W Jin, RM Riley, RD Wolfinger, KP White, G Passador-Gurgel, G Gibson Nature genetics 29 (4), 389-395, 2001 | 765 | 2001 |
| Integrative and comparative genomic analysis of HPV-positive and HPV-negative head and neck squamous cell carcinomas TY Seiwert, Z Zuo, MK Keck, A Khattri, CS Pedamallu, T Stricker, C Brown, ... Clinical cancer research 21 (3), 632-641, 2015 | 677 | 2015 |
| A user's guide to the encyclopedia of DNA elements (ENCODE) RM Myers, J Stamatoyannopoulos, M Snyder, I Dunham, RC Hardison, ... PLoS biology 9 (4), 2011 | 677 | 2011 |
| BAC TransgeneOmics: a high-throughput method for exploration of protein function in mammals I Poser, M Sarov, JRA Hutchins, JK Hériché, Y Toyoda, A Pozniakovsky, ... Nature methods 5 (5), 409-415, 2008 | 669 | 2008 |
| Integrative functional genomic analysis of human brain development and neuropsychiatric risks M Li, G Santpere, Y Imamura Kawasawa, OV Evgrafov, FO Gulden, ... Science 362 (6420), eaat7615, 2018 | 666 | 2018 |
| Comparative genome sequencing of Drosophila pseudoobscura: chromosomal, gene, and cis-element evolution S Richards, Y Liu, BR Bettencourt, P Hradecky, S Letovsky, R Nielsen, ... Genome research 15 (1), 1-18, 2005 | 594 | 2005 |
| RNA-seq differential expression studies: more sequence or more replication? Y Liu, J Zhou, KP White Bioinformatics 30 (3), 301-304, 2014 | 589 | 2014 |
| A cis-regulatory map of the Drosophila genome N Nègre, CD Brown, L Ma, CA Bristow, SW Miller, U Wagner, ... Nature 471 (7339), 527-531, 2011 | 580 | 2011 |
