Sequencing of 53,831 diverse genomes from the NHLBI TOPMed Program D Taliun, DN Harris, MD Kessler, J Carlson, ZA Szpiech, R Torres, ... Nature 590 (7845), 290-299, 2021 | 1425 | 2021 |
Transcriptome and methylome profiling reveals relics of genome dominance in the mesopolyploid Brassica oleracea IAP Parkin, C Koh, H Tang, SJ Robinson, S Kagale, WE Clarke, CD Town, ... Genome biology 15, 1-18, 2014 | 504 | 2014 |
High-coverage whole-genome sequencing of the expanded 1000 Genomes Project cohort including 602 trios M Byrska-Bishop, US Evani, X Zhao, AO Basile, HJ Abel, AA Regier, ... Cell 185 (18), 3426-3440. e19, 2022 | 477 | 2022 |
Haplotype-resolved diverse human genomes and integrated analysis of structural variation P Ebert, PA Audano, Q Zhu, B Rodriguez-Martin, D Porubsky, MJ Bonder, ... Science 372 (6537), eabf7117, 2021 | 472 | 2021 |
The emerging biofuel crop Camelina sativa retains a highly undifferentiated hexaploid genome structure S Kagale, C Koh, J Nixon, V Bollina, WE Clarke, R Tuteja, C Spillane, ... Nature communications 5 (1), 3706, 2014 | 383 | 2014 |
A high-density SNP genotyping array for Brassica napus and its ancestral diploid species based on optimised selection of single-locus markers in the allotetraploid … WE Clarke, EE Higgins, J Plieske, R Wieseke, C Sidebottom, Y Khedikar, ... Theoretical and Applied Genetics 129, 1887-1899, 2016 | 220 | 2016 |
Polyploid evolution of the Brassicaceae during the Cenozoic era S Kagale, SJ Robinson, J Nixon, R Xiao, T Huebert, J Condie, D Kessler, ... The Plant Cell 26 (7), 2777-2791, 2014 | 193 | 2014 |
Ancient orphan crop joins modern era: gene-based SNP discovery and mapping in lentil AG Sharpe, L Ramsay, LA Sanderson, MJ Fedoruk, WE Clarke, R Li, ... BMC genomics 14, 1-13, 2013 | 172 | 2013 |
The compact genome of the plant pathogen Plasmodiophora brassicae is adapted to intracellular interactions with host Brassica spp SA Rolfe, SE Strelkov, MG Links, WE Clarke, SJ Robinson, M Djavaheri, ... BMC genomics 17, 1-15, 2016 | 136 | 2016 |
Curated variation benchmarks for challenging medically relevant autosomal genes J Wagner, ND Olson, L Harris, J McDaniel, H Cheng, A Fungtammasan, ... Nature biotechnology 40 (5), 672-680, 2022 | 135 | 2022 |
De novo sequence assembly of Albugo candida reveals a small genome relative to other biotrophic oomycetes MG Links, E Holub, RHY Jiang, AG Sharpe, D Hegedus, E Beynon, ... BMC genomics 12, 1-12, 2011 | 131 | 2011 |
Benchmarking challenging small variants with linked and long reads J Wagner, ND Olson, L Harris, Z Khan, J Farek, M Mahmoud, A Stankovic, ... Cell genomics 2 (5), 2022 | 123 | 2022 |
Pangenome-based genome inference allows efficient and accurate genotyping across a wide spectrum of variant classes J Ebler, P Ebert, WE Clarke, T Rausch, PA Audano, T Houwaart, Y Mao, ... Nature genetics 54 (4), 518-525, 2022 | 117 | 2022 |
Monolignol biosynthesis is associated with resistance to Sclerotinia sclerotiorum in Camelina sativa C Eynck, G Séguin‐Swartz, WE Clarke, IAP Parkin Molecular plant pathology 13 (8), 887-899, 2012 | 110 | 2012 |
Performance assessment of DNA sequencing platforms in the ABRF Next-Generation Sequencing Study J Foox, SW Tighe, CM Nicolet, JM Zook, M Byrska-Bishop, WE Clarke, ... Nature biotechnology 39 (9), 1129-1140, 2021 | 86 | 2021 |
NHLBI Trans-Omics for Precision Medicine (TOPMed) Consortium D Taliun, DN Harris, MD Kessler, J Carlson, ZA Szpiech, R Torres, ... Sequencing of 53, 290-299, 2021 | 84 | 2021 |
An archived activation tagged population of Arabidopsis thalianato facilitate forward genetics approaches SJ Robinson, LH Tang, BAG Mooney, SJ McKay, WE Clarke, MG Links, ... BMC Plant Biology 9, 1-15, 2009 | 81 | 2009 |
The developmental transcriptome atlas of the biofuel crop Camelina sativa S Kagale, J Nixon, Y Khedikar, A Pasha, NJ Provart, WE Clarke, V Bollina, ... The plant journal 88 (5), 879-894, 2016 | 77 | 2016 |
Single-nucleotide polymorphism identification and genotyping in Camelina sativa R Singh, V Bollina, EE Higgins, WE Clarke, C Eynck, C Sidebottom, ... Molecular breeding 35, 1-13, 2015 | 53 | 2015 |
Genomic DNA enrichment using sequence capture microarrays: a novel approach to discover sequence nucleotide polymorphisms (SNP) in Brassica napus L WE Clarke, IA Parkin, HA Gajardo, DJ Gerhardt, E Higgins, C Sidebottom, ... PloS one 8 (12), e81992, 2013 | 49 | 2013 |