| RegulonDB version 9.0: high-level integration of gene regulation, coexpression, motif clustering and beyond S Gama-Castro, H Salgado, A Santos-Zavaleta, D Ledezma-Tejeida, ... Nucleic acids research 44 (D1), D133-D143, 2016 | 547 | 2016 |
| RegulonDB v 10.5: tackling challenges to unify classic and high throughput knowledge of gene regulation in E. coli K-12 A Santos-Zavaleta, H Salgado, S Gama-Castro, M Sánchez-Pérez, ... Nucleic acids research 47 (D1), D212-D220, 2019 | 373 | 2019 |
| COLOMBOS v3. 0: leveraging gene expression compendia for cross-species analyses M Moretto, P Sonego, N Dierckxsens, M Brilli, L Bianco, ... Nucleic acids research 44 (D1), D620-D623, 2016 | 63 | 2016 |
| Metabolic cross-feeding structures the assembly of polysaccharide degrading communities S Pontrelli, R Szabo, S Pollak, J Schwartzman, D Ledezma-Tejeida, ... Science advances 8 (8), eabk3076, 2022 | 45 | 2022 |
| COLOMBOS v2. 0: an ever expanding collection of bacterial expression compendia P Meysman, P Sonego, L Bianco, Q Fu, D Ledezma-Tejeida, ... Nucleic acids research 42 (D1), D649-D653, 2014 | 44 | 2014 |
| Genome-Wide Mapping of Transcriptional Regulation and Metabolism Describes Information-Processing Units in Escherichia coli D Ledezma-Tejeida, C Ishida, J Collado-Vides Frontiers in microbiology 8, 1466, 2017 | 19 | 2017 |
| RegulonDB v12.0: a comprehensive resource of transcriptional regulation in E. coli K-12 H Salgado, S Gama-Castro, P Lara, C Mejia-Almonte, ... Nucleic Acids Research 52 (D1), D255-D264, 2024 | 14 | 2024 |
| Metabolism as a signal generator in bacteria D Ledezma-Tejeida, E Schastnaya, U Sauer Current Opinion in Systems Biology 28, 100404, 2021 | 10 | 2021 |
| Limits to a classic paradigm: most transcription factors in E. coli regulate genes involved in multiple biological processes D Ledezma-Tejeida, L Altamirano-Pacheco, V Fajardo, J Collado-Vides Nucleic Acids Research 47 (13), 6656-6667, 2019 | 10 | 2019 |
| Hierarchical control of microbial community assembly S Pontrelli, R Szabo, S Pollak, J Schwartzman, D Ledezma-Tejeida, ... | 8 | 2021 |
| Sensory Systems and Transcriptional Regulation in Escherichia coli G Femerling, S Gama-Castro, P Lara, D Ledezma-Tejeida, VH Tierrafría, ... Frontiers in Bioengineering and Biotechnology 10, 823240, 2022 | 5 | 2022 |
| Suppression of EZH2 accelerates MYC-driven lymphomagenesis by inhibition of apoptosis I Appelmann, C Scuoppo, V Thapar, D Ledezma, A Lujambio, SW Lowe, ... Blood, The Journal of the American Society of Hematology 124 (21), 3009-3009, 2014 | 1 | 2014 |
| Putrescine acts as a signaling metabolite in the transition from nodulation to nitrogen fixation in Rhizobium phaseoli EM Hernandez-Benitez, E Martinez-Romero, JL Aguirre-Noyola, ... bioRxiv, 2024.01. 29.577838, 2024 | | 2024 |
| Proof of Concept of Eukaryotic Genetic Sensory Response Units in TGF-beta Signaling in Idiopathic Pulmonary Fibrosis YI Balderas-Martinez, B Moreno-Quiroga, M Negreros, ... C72. PULMONARY FIBROSIS: MECHANISMS AND MODELS, A5770-A5770, 2018 | | 2018 |
| Sensory Systems and Transcriptional G Femerling, S Gama-Castro, P Lara, D Ledezma-Tejeida, VH Tierrafría, ... | | |
| Regulon J Collado-Vides, A Santos-Zavaleta, S Gama-Castro, M Sánchez-Pérez, ... | | |
