| Viruses and miRNAs: more friends than foes P Bruscella, S Bottini, C Baudesson, JM Pawlotsky, C Feray, M Trabucchi Frontiers in microbiology 8, 824, 2017 | 206 | 2017 |
| Post-transcriptional gene silencing mediated by microRNAs is controlled by nucleoplasmic Sfpq S Bottini, N Hamouda-Tekaya, R Mategot, LE Zaragosi, S Audebert, ... Nature communications 8 (1), 1189, 2017 | 92 | 2017 |
| RNY (YRNA)-derived small RNAs regulate cell death and inflammation in monocytes/macrophages Z Hizir, S Bottini, V Grandjean, M Trabucchi, E Repetto Cell Death and Disease 8, e2530, 2017 | 71 | 2017 |
| Paternal obesity: how bad is it for sperm quality and progeny health? G Raad, M Hazzouri, S Bottini, M Trabucchi, J Azoury, V Grandjean Basic and clinical andrology 27, 1-12, 2017 | 68 | 2017 |
| Recent computational developments on CLIP-seq data analysis and microRNA targeting implications S Bottini, D Pratella, V Grandjean, E Repetto, M Trabucchi Briefings in bioinformatics 19 (6), 1290-1301, 2018 | 40 | 2018 |
| From benchmarking HITS-CLIP peak detection programs to a new method for identification of miRNA-binding sites from Ago2-CLIP data S Bottini, N Hamouda-Tekaya, B Tanasa, LE Zaragosi, V Grandjean, ... Nucleic Acids Research, 15, 2017 | 36 | 2017 |
| A survey of autoencoder algorithms to pave the diagnosis of rare diseases D Pratella, S Ait-El-Mkadem Saadi, S Bannwarth, V Paquis-Fluckinger, ... International journal of molecular sciences 22 (19), 10891, 2021 | 34 | 2021 |
| Analysis of the regulated transcriptome of Neisseria meningitidis in human blood using a tiling array E Del Tordello, S Bottini, A Muzzi, D Serruto Journal of bacteriology 194 (22), 6217-6232, 2012 | 31 | 2012 |
| Multi-omics approaches to improve mitochondrial disease diagnosis: challenges, advances, and perspectives J Labory, M Fierville, S Ait-El-Mkadem, S Bannwarth, ... Frontiers in Molecular Biosciences 7, 590842, 2020 | 30 | 2020 |
| Global Transcriptome Analysis Reveals Small RNAs Affecting Neisseria meningitidis Bacteremia L Fagnocchi, S Bottini, G Golfieri, L Fantappie, F Ferlicca, A Antunes, ... PLoS One 10 (5), e0126325, 2015 | 26 | 2015 |
| Co-clustering of multivariate functional data for the analysis of air pollution in the south of France C Bouveyron, J Jacques, A Schmutz, F Simoes, S Bottini The Annals of Applied Statistics 16 (3), 1400-1422, 2022 | 20 | 2022 |
| ProCoCoA: a quantitative approach for analyzing protein core composition S Bottini, A Bernini, M De Chiara, D Garlaschelli, O Spiga, M Dioguardi, ... Computational biology and chemistry 43, 29-34, 2013 | 12 | 2013 |
| Benchmarking feature selection and feature extraction methods to improve the performances of machine-learning algorithms for patient classification using metabolomics … J Labory, E Njomgue-Fotso, S Bottini Computational and Structural Biotechnology Journal 23, 1274-1287, 2024 | 9 | 2024 |
| ABEILLE: a novel method for ABerrant Expression Identification empLoying machine LEarning from RNA-sequencing data J Labory, G Le Bideau, D Pratella, JE Yao, S Ait-El-Mkadem Saadi, ... Bioinformatics 38 (20), 4754-4761, 2022 | 8 | 2022 |
| Viruses and miRNAs: More friends than foes. Front Microbiol. 2017; 8: 824 P Bruscella, S Bottini, C Baudesson, JM Pawlotsky, C Feray, M Trabucchi Epub 2017/05/31. https://doi. org/10.3389/fmicb. 2017. 00824 PMID: 28555130, 2017 | 7 | 2017 |
| Viruses and miRNAs: more friends than foes. Front Microbiol 8: 824 P Bruscella, S Bottini, C Baudesson, JM Pawlotsky, C Feray, M Trabucchi | 6 | 2017 |
| Systemic CLIP-seq analysis and game theory approach to model microRNA mode of binding F Serra, S Bottini, D Pratella, MG Stathopoulou, W Sebille, L El-Hami, ... Nucleic Acids Research 49 (11), e66-e66, 2021 | 5 | 2021 |
| NiPTUNE: an automated pipeline for noninvasive prenatal testing in an accurate, integrative and flexible framework V Duboc, D Pratella, M Milanesio, J Boudjarane, S Descombes, ... Briefings in Bioinformatics 23 (1), bbab380, 2022 | 4 | 2022 |
| AI and multi-omics for rare diseases: challenges, advances and perspectives S Bottini, F Emmert-Streib, L Franco Frontiers in Molecular Biosciences 8, 719978, 2021 | 3 | 2021 |
| Identification and characterization of specific motifs in effector proteins of plant parasites using MOnSTER G Calia, P Porracciolo, Y Chen, D Kozlowski, H Schuler, A Cestaro, ... Communications Biology 7 (1), 850, 2024 | 2 | 2024 |
