Local fitness landscape of the green fluorescent protein KS Sarkisyan, DA Bolotin, MV Meer, DR Usmanova, AS Mishin, ... Nature 533 (7603), 397-401, 2016 | 590 | 2016 |
Contact order revisited: influence of protein size on the folding rate DN Ivankov, SO Garbuzynskiy, E Alm, KW Plaxco, D Baker, AV Finkelstein Protein science 12 (9), 2057-2062, 2003 | 449 | 2003 |
Prediction of protein folding rates from the amino acid sequence-predicted secondary structure DN Ivankov, AV Finkelstein Proceedings of the National Academy of Sciences 101 (24), 8942-8944, 2004 | 251 | 2004 |
Chain length is the main determinant of the folding rate for proteins with three‐state folding kinetics OV Galzitskaya, SO Garbuzynskiy, DN Ivankov, AV Finkelstein Proteins: Structure, Function, and Bioinformatics 51 (2), 162-166, 2003 | 184 | 2003 |
Using AlphaFold to predict the impact of single mutations on protein stability and function MA Pak, KA Markhieva, MS Novikova, DS Petrov, IS Vorobyev, ... Plos one 18 (3), e0282689, 2023 | 173 | 2023 |
Folding nuclei in proteins OV Galzitskaya, DN Ivankov, AV Finkelstein Molecular Biology 35, 605-613, 2001 | 105 | 2001 |
An experimental assay of the interactions of amino acids from orthologous sequences shaping a complex fitness landscape VO Pokusaeva, DR Usmanova, EV Putintseva, L Espinar, KS Sarkisyan, ... PLoS genetics 15 (4), e1008079, 2019 | 94 | 2019 |
Coupling between properties of the protein shape and the rate of protein folding DN Ivankov, NS Bogatyreva, MY Lobanov, OV Galzitskaya PloS one 4 (8), e6476, 2009 | 90 | 2009 |
Golden triangle for folding rates of globular proteins SO Garbuzynskiy, DN Ivankov, NS Bogatyreva, AV Finkelstein Proceedings of the National Academy of Sciences 110 (1), 147-150, 2013 | 86 | 2013 |
Self-consistency test reveals systematic bias in programs for prediction change of stability upon mutation DR Usmanova, NS Bogatyreva, J Ariño Bernad, AA Eremina, ... Bioinformatics 34 (21), 3653-3658, 2018 | 72 | 2018 |
KineticDB: a database of protein folding kinetics NS Bogatyreva, AA Osypov, DN Ivankov Nucleic acids research 37 (suppl_1), D342-D346, 2009 | 72 | 2009 |
There and back again: Two views on the protein folding puzzle AV Finkelstein, AJ Badretdin, OV Galzitskaya, DN Ivankov, NS Bogatyreva, ... Physics of life reviews 21, 56-71, 2017 | 55 | 2017 |
A structural perspective of compensatory evolution DN Ivankov, AV Finkelstein, FA Kondrashov Current opinion in structural biology 26, 104-112, 2014 | 49 | 2014 |
More compact protein globules exhibit slower folding rates OV Galzitskaya, DC Reifsnyder, NS Bogatyreva, DN Ivankov, ... Proteins: Structure, Function, and Bioinformatics 70 (2), 329-332, 2008 | 45 | 2008 |
How many signal peptides are there in bacteria? DN Ivankov, SH Payne, MY Galperin, S Bonissone, PA Pevzner, ... Environmental microbiology 15 (4), 983-990, 2013 | 43 | 2013 |
Theoretical Study of a Landscape of Protein Folding− Unfolding Pathways. Folding Rates at Midtransition DN Ivankov, AV Finkelstein Biochemistry 40 (33), 9957-9961, 2001 | 41 | 2001 |
Unexpected diversity of signal peptides in prokaryotes SH Payne, S Bonissone, S Wu, RN Brown, DN Ivankov, D Frishman, ... MBio 3 (6), 10.1128/mbio. 00339-12, 2012 | 39 | 2012 |
Solution of Levinthal’s paradox and a physical theory of protein folding times DN Ivankov, AV Finkelstein Biomolecules 10 (2), 250, 2020 | 34 | 2020 |
Compactness determines protein folding type OV Galzitskaya, NS Bogatyreva, DN Ivankov Journal of Bioinformatics and Computational Biology 6 (04), 667-680, 2008 | 31 | 2008 |
QARIP: a web server for quantitative proteomic analysis of regulated intramembrane proteolysis DN Ivankov, NS Bogatyreva, P Hönigschmid, B Dislich, S Hogl, PH Kuhn, ... Nucleic acids research 41 (W1), W459-W464, 2013 | 27 | 2013 |