The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2018 update E Afgan, D Baker, B Batut, M Van Den Beek, D Bouvier, M Čech, J Chilton, ... Nucleic acids research 46 (W1), W537-W544, 2018 | 3912 | 2018 |
The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2020 update V Jalili, E Afgan, Q Gu, D Clements, D Blankenberg, J Goecks, J Taylor, ... Nucleic acids research 48 (W1), W395-W402, 2020 | 435 | 2020 |
How machine learning will transform biomedicine J Goecks, V Jalili, LM Heiser, JW Gray Cell 181 (1), 92-101, 2020 | 376 | 2020 |
GenoMetric Query Language: a novel approach to large-scale genomic data management M Masseroli, P Pinoli, F Venco, A Kaitoua, V Jalili, F Palluzzi, H Muller, ... Bioinformatics 31 (12), 1881-1888, 2015 | 128 | 2015 |
Inverting the model of genomics data sharing with the NHGRI Genomic Data Science Analysis, Visualization, and Informatics Lab-space MC Schatz, AA Philippakis, E Afgan, E Banks, VJ Carey, RJ Carroll, ... Cell Genomics 2 (1), 2022 | 94 | 2022 |
Using combined evidence from replicates to evaluate ChIP-seq peaks V Jalili, M Matteucci, M Masseroli, MJ Morelli Bioinformatics 31 (17), 2761-2769, 2015 | 75 | 2015 |
Galaxy-ML: An accessible, reproducible, and scalable machine learning toolkit for biomedicine Q Gu, A Kumar, S Bray, A Creason, A Khanteymoori, V Jalili, B Grüning, ... PLoS computational biology 17 (6), e1009014, 2021 | 18 | 2021 |
Next generation indexing for genomic intervals V Jalili, M Matteucci, J Goecks, Y Deldjoo, S Ceri IEEE Transactions on Knowledge and Data Engineering 31 (10), 2008-2021, 2018 | 15 | 2018 |
MuSERA: multiple sample enriched region assessment V Jalili, M Matteucci, MJ Morelli, M Masseroli Briefings in bioinformatics 18 (3), 367-381, 2017 | 13 | 2017 |
Indexing next-generation sequencing data V Jalili, M Matteucci, M Masseroli, S Ceri Information Sciences 384, 90-109, 2017 | 13 | 2017 |
Federated galaxy: Biomedical computing at the frontier E Afgan, V Jalili, N Goonasekera, J Taylor, J Goecks 2018 IEEE 11th International Conference on Cloud Computing (CLOUD), 871-874, 2018 | 12 | 2018 |
Systematic evaluation of genome sequencing for the diagnostic assessment of autism spectrum disorder and fetal structural anomalies C Lowther, E Valkanas, JL Giordano, HZ Wang, BB Currall, K O’Keefe, ... The American Journal of Human Genetics 110 (9), 1454-1469, 2023 | 11 | 2023 |
Cloud bursting galaxy: federated identity and access management V Jalili, E Afgan, J Taylor, J Goecks Bioinformatics 36 (1), 1-9, 2020 | 8 | 2020 |
Explorative visual analytics on interval-based genomic data and their metadata V Jalili, M Matteucci, M Masseroli, S Ceri BMC bioinformatics 18, 1-15, 2017 | 6 | 2017 |
Systematic evaluation of genome sequencing for the assessment of fetal structural anomalies C Lowther, E Valkanas, JL Giordano, HZ Wang, BB Currall, K O’Keefe, ... BioRxiv, 2020.08. 12.248526, 2020 | 3 | 2020 |
Accessible, Reproducible, and Scalable Machine Learning for Biomedicine Q Gu, A Kumar, S Bray, A Creason, A Khanteymoori, V Jalili, B Grüning, ... bioRxiv, 2020.06. 25.172445, 2020 | 1 | 2020 |
Reasoning with shapes: profiting cognitive susceptibilities to infer linear mapping transformations between shapes V Jalili arXiv preprint arXiv:1709.00158, 2017 | 1 | 2017 |
Efficient data structures for cross-samples inferences on genomic data V Jalili Politecnico di Milano, 2016 | 1 | 2016 |
Rescuing biologically relevant consensus regions across replicated samples V Jalili, MA Cremona, F Palluzzi BMC bioinformatics 24 (1), 240, 2023 | | 2023 |
Adding software to package management systems can increase their citation by 280% V Jalili, D Clements, B Grüning, D Blankenberg, J Goecks bioRxiv, 2020.11. 16.385211, 2020 | | 2020 |