CRISPR-dCas9 mediated TET1 targeting for selective DNA demethylation at BRCA1 promoter SR Choudhury, Y Cui, K Lubecka, B Stefanska, J Irudayaraj Oncotarget 7 (29), 46545-46556, 2016 | 393 | 2016 |
Expansion sequencing: spatially precise in situ transcriptomics in intact biological systems S Alon, DR Goodwin, A Sinha, AT Wassie, F Chen, ER Daugharthy, ... Science 371 (6528), 2021 | 289 | 2021 |
Quantitative imaging of single mRNA splice variants in living cells K Lee, Y Cui, LP Lee, J Irudayaraj Nature Nanotechnology 9 (6), 474-480, 2014 | 161 | 2014 |
Malic acid carbon dots: from super-resolution live-cell imaging to highly efficient separation B Zhi*, Y Cui* (*co-first author), S Wang, B Frank, DN Williams, RP Brown, ... ACS Nano 12 (6), 5741–5752, 2018 | 153 | 2018 |
Synthesis, applications and potential photoluminescence mechanism of spectrally tunable carbon dots B Zhi, XX Yao, Y Cui, G Orr, C Haynes Nanoscale 11, 20411 - 20428, 2019 | 101 | 2019 |
Multicolor polymeric carbon dots: synthesis, separation and polyamide-supported molecular fluorescence B Zhi, X Yao, M Wu, A Mensch, Y Cui, J Deng, JJ Duchimaza-Heredia, ... Chemical Science 12, 2441-2455, 2021 | 89 | 2021 |
Comprehensive proteomics analysis of stressed human islets identifies GDF15 as a target for type 1 diabetes intervention ES Nakayasu, F Syed, SA Tersey, MA Gritsenko, HD Mitchell, CY Chan, ... Cell Metabolism 31, 363-374, 2020 | 85 | 2020 |
Bioinspired membrane provides periosteum-mimetic microenvironment for accelerating vascularized bone regeneration G Yang, H Liu, Y Cui, J Li, X Zhou, N Wang, F Wu, Y Li, Y Liu, X Jiang, ... Biomaterials 268, 120561, 2021 | 74 | 2021 |
Optical clearing delivers ultrasensitive hyperspectral dark-field imaging for single-cell evaluation Y Cui*, X Wang* (*co-first author), W Ren, J Liu, J Irudayaraj ACS Nano 10 (3), 3132–3143, 2016 | 61 | 2016 |
Oxygen nanobubbles revert hypoxia by methylation programming PN Bhandari, Y Cui, BD Elzey, CJ Goergen, CM Long, J Irudayaraj Scientific Reports 7 (1), 9268, 2017 | 59 | 2017 |
Single-cell quantification of cytosine modifications by hyperspectral dark-field imaging X Wang*, Y Cui* (*co-first author), J Irudayaraj ACS Nano 9 (12), 11924–32, 2015 | 59 | 2015 |
Understanding the mechanical properties of DNA origami tiles and controlling the kinetics of their folding and unfolding reconfiguration H Chen, TW Weng, M Riccitelli, Y Cui, J Irudayaraj, JH Choi Journal of the American Chemical Society 136 (19), 6995–7005, 2014 | 58 | 2014 |
Single-cell genomic variation induced by mutational processes in cancer T Funnell, CH O’Flanagan, MJ Williams, A McPherson, S McKinney, ... Nature, 1-10, 2022 | 55 | 2022 |
The long noncoding RNA Paupar modulates PAX6 regulatory activities to promote alpha cell development and function RA Singer, L Arnes, Y Cui, J Wang, Y Gao, MA Guney, ... Cell Metabolism 30, 1091-1106, 2019 | 53 | 2019 |
Second harmonic super-resolution microscopy for quantification of mRNA at single copy sensitivity J Liu, IH Cho, Y Cui, JMK Irudayaraj ACS Nano 8 (12), 12418-27, 2014 | 46 | 2014 |
MITI Minimum Information guidelines for highly multiplexed tissue images D Schapiro, C Yapp, A Sokolov, SM Reynolds, YA Chen, D Sudar, Y Xie, ... Nature Methods 19 (3), 262-267, 2022 | 43 | 2022 |
The hypomethylating agent Decitabine causes a paradoxical increase in 5-hydroxymethylcytosine in human leukemia cells B Chowdhury, A McGovern, Y Cui, SR Choudhury, IH Cho, B Cooper, ... Scientific Reports 5, 9281, 2015 | 42 | 2015 |
Epigenetic biomarker screening by FLIM-FRET for combination therapy in ER+ breast cancer W Liu*, Y Cui* (*co-first author), W Ren, J Irudayaraj Clinical Epigenetics 11 (1), 16, 2019 | 38 | 2019 |
Fluctuation localization imaging-based fluorescence in situ hybridization (fliFISH) for accurate detection and counting of RNA copies in single cells Y Cui, D Hu, LM Markillie, WB Chrisler, MJ Gaffrey, C Ansong, L Sussel, ... Nucleic Acids Research 46 (2), e7, 2018 | 38 | 2018 |
PLGA-PEG nano-delivery system for epigenetic therapy A Naz*, Y Cui* (*co-first author), CJ Collins, DH Thompson, J Irudayaraj Biomedicine & Pharmacotherapy 90, 586-597, 2017 | 34 | 2017 |