| The ecoresponsive genome of Daphnia pulex JK Colbourne, ME Pfrender, D Gilbert, WK Thomas, A Tucker, TH Oakley, ... Science 331 (6017), 555-561, 2011 | 1414 | 2011 |
| TIGRFAMs and genome properties in 2013 DH Haft, JD Selengut, RA Richter, D Harkins, MK Basu, E Beck Nucleic acids research 41 (D1), D387-D395, 2012 | 603 | 2012 |
| APOBEC4, a new member of the AID/APOBEC family of polynucleotide (deoxy) cytidine deaminases predicted by computational analysis IB Rogozin, MK Basu, IK Jordan, YI Pavlov, EV Koonin Cell cycle 4 (9), 1281-1285, 2005 | 210 | 2005 |
| Evolution of protein domain promiscuity in eukaryotes MK Basu, L Carmel, IB Rogozin, EV Koonin Genome research 18 (3), 449-461, 2008 | 200 | 2008 |
| Biological Systems Discovery In Silico: Radical S-Adenosylmethionine Protein Families and Their Target Peptides for Posttranslational Modification DH Haft, MK Basu Journal of bacteriology 193 (11), 2745-2755, 2011 | 178 | 2011 |
| Expansion of ribosomally produced natural products: a nitrile hydratase-and Nif11-related precursor family DH Haft, MK Basu, DA Mitchell BMC biology 8, 1-15, 2010 | 169 | 2010 |
| Domain mobility in proteins: functional and evolutionary implications MK Basu, E Poliakov, IB Rogozin Briefings in bioinformatics 10 (3), 205-216, 2009 | 104 | 2009 |
| Analysis of rare genomic changes does not support the unikont–bikont phylogeny and suggests cyanobacterial symbiosis as the point of primary radiation of eukaryotes IB Rogozin, MK Basu, M Csürös, EV Koonin Genome biology and evolution 1, 99-113, 2009 | 92 | 2009 |
| Adaptation to low temperature and regulation of gene expression in Antarctic psychrotrophic bacteria MK Ray, GS Kumar, K Janiyani, K Kannan, P Jagtap, MK Basu, S Shivaji Journal of biosciences 23, 423-435, 1998 | 76 | 1998 |
| Crosstalk between the mitochondrial fission protein, Drp1, and the cell cycle is identified across various cancer types and can impact survival of epithelial ovarian cancer … DK Tanwar, DJ Parker, P Gupta, B Spurlock, RD Alvarez, MK Basu, ... Oncotarget 7 (37), 60021, 2016 | 75 | 2016 |
| Grammar of protein domain architectures L Yu, DK Tanwar, EDS Penha, YI Wolf, EV Koonin, MK Basu Proceedings of the National Academy of Sciences 116 (9), 3636-3645, 2019 | 65 | 2019 |
| A new mitochondrial pool of cyclin E, regulated by Drp1, is linked to cell-density-dependent cell proliferation DJ Parker, A Iyer, S Shah, A Moran, AB Hjelmeland, MK Basu, R Liu, ... Journal of cell science 128 (22), 4171-4182, 2015 | 49 | 2015 |
| U12 intron positions are more strongly conserved between animals and plants than U2 intron positions MK Basu, W Makalowski, IB Rogozin, EV Koonin Biology direct 3, 1-5, 2008 | 42 | 2008 |
| Evolutionary dynamics of introns in plastid-derived genes in plants: saturation nearly reached but slow intron gain continues MK Basu, IB Rogozin, O Deusch, T Dagan, W Martin, EV Koonin Molecular biology and evolution 25 (1), 111-119, 2008 | 39 | 2008 |
| Evolution of eukaryotic cysteine sulfinic acid reductase, sulfiredoxin (Srx), from bacterial chromosome partitioning protein ParB MK Basu, EV Koonin Cell cycle 4 (7), 947-952, 2005 | 39 | 2005 |
| Computational methods and resources for the interpretation of genomic variants in cancer R Tian, MK Basu, E Capriotti BMC genomics 16 (Suppl 8), S7, 2015 | 32 | 2015 |
| ContrastRank: a new method for ranking putative cancer driver genes and classification of tumor samples R Tian, MK Basu, E Capriotti Bioinformatics 30 (17), i572-i578, 2014 | 31 | 2014 |
| ProPhylo: partial phylogenetic profiling to guide protein family construction and assignment of biological process MK Basu, JD Selengut, DH Haft BMC bioinformatics 12, 1-14, 2011 | 24 | 2011 |
| Primordial spliceosomal introns were probably U2-type MK Basu, IB Rogozin, EV Koonin Trends in genetics 24 (11), 525-528, 2008 | 24 | 2008 |
| STRAP regulates alternative splicing fidelity during lineage commitment of mouse embryonic stem cells L Jin, Y Chen, DK Crossman, A Datta, T Vu, JA Mobley, MK Basu, ... Nature communications 11 (1), 5941, 2020 | 21 | 2020 |
