Machine Learning and Network Analysis of Molecular Dynamics Trajectories Reveal Two Chains of Red/Ox-specific Residue Interactions in Human Protein Disulfide Isomerase R Karamzadeh, MH Karimi-Jafari, A Sharifi-Zarchi, H Chitsaz, ... Scientific Reports 7 (1), 3666, 2017 | 40 | 2017 |
An improved ab initio potential energy surface for N2–N2 MHK Jafari, A Maghari, S Shahbazian Chemical physics 314 (1-3), 249-262, 2005 | 33 | 2005 |
Insights into the molecular interaction between two polyoxygenated cinnamoylcoumarin derivatives and human serum albumin A Khammari, AA Saboury, MH Karimi-Jafari, M Khoobi, A Ghasemi, ... Physical Chemistry Chemical Physics 19 (15), 10099-10115, 2017 | 32 | 2017 |
iMM1865: A new reconstruction of mouse genome-scale metabolic model S Khodaee, Y Asgari, M Totonchi, MH Karimi-Jafari Scientific Reports 10 (1), 6177, 2020 | 19 | 2020 |
Identification of a missense variant in CLDN2 in obstructive azoospermia M Askari, R Karamzadeh, N Ansari-Pour, MH Karimi-Jafari, N Almadani, ... Journal of human genetics 64 (10), 1023-1032, 2019 | 17 | 2019 |
Quantitative Characterization of the Interaction Space of the Mammalian Carbonic Anhydrase Isoforms I, II, VII, IX, XII, and XIV and their Inhibitors, Using the … B Rasti, MH Karimi‐Jafari, JB Ghasemi Chemical biology & drug design 88 (3), 341-353, 2016 | 15 | 2016 |
An Ab Initio Intermolecular Potential Energy Surface for the F2 Dimer MH Karimi-Jafari, A Maghari The Journal of Physical Chemistry A 111 (27), 6077-6083, 2007 | 15 | 2007 |
Polymyxins interaction to the human serum albumin: A thermodynamic and computational study A Poursoleiman, MH Karimi-Jafari, Z Zolmajd-Haghighi, M Bagheri, ... Spectrochimica Acta Part A: Molecular and Biomolecular Spectroscopy 217, 155-163, 2019 | 13 | 2019 |
Coping with the anisotropy in the analytical representation of an ab initio potential energy surface for the Cl2 dimer MH Karimi-Jafari, M Ashouri, A Yeganeh-Jabri Phys. Chem. Chem. Phys. 11 (27), 5561-5568, 2009 | 13 | 2009 |
Proteochemometric Modeling of the Interaction Space of Carbonic Anhydrase and its Inhibitors: An Assessment of Structure‐based and Sequence‐based Descriptors B Rasti, M Namazi, MH Karimi‐Jafari, JB Ghasemi Molecular Informatics 36 (4), 1600102, 2017 | 12 | 2017 |
Ensemble learning from ensemble docking: revisiting the optimum ensemble size problem S Mohammadi, Z Narimani, M Ashouri, R Firouzi, MH Karimi‐Jafari Scientific Reports 12 (1), 1-15, 2022 | 11 | 2022 |
Intermolecular Potential Energy Surface of the N2− CO Dimer: Ab Initio Investigation and Analytical Representation MH Karimi-Jafari, A Maghari, A Farjamnia The Journal of Physical Chemistry A 115 (6), 1143-1151, 2011 | 10 | 2011 |
Prediction of antimicrobial peptides toxicity based on their physico-chemical properties using machine learning techniques H Khabbaz, MH Karimi-Jafari, AA Saboury, B BabaAli BMC bioinformatics 22 (1), 1-11, 2021 | 9 | 2021 |
Hersintuzumab: A novel humanized anti-HER2 monoclonal antibody induces potent tumor growth inhibition MM Amiri, F Golsaz-Shirazi, T Soltantoyeh, R Hosseini-Ghatar, ... Investigational new drugs 36 (2), 171-186, 2018 | 9 | 2018 |
Quantifying the anisotropy of intermolecular potential energy surfaces: a critical assessment of available N2–N2 potentials MH Karimi-Jafari, M Ashouri Phys. Chem. Chem. Phys. 13 (20), 9887-9894, 2011 | 9 | 2011 |
Using the Semiempirical Quantum Mechanics in Improving the Molecular Docking: A Case Study with CDK2 S Bagheri, H Behnejad, R Firouzi, MH Karimi‐Jafari Molecular Informatics 39 (9), 2000036, 2020 | 8 | 2020 |
Efficient construction of a diverse conformational library for amyloid-β as an intrinsically disordered protein N Salehi, M Amininasab, R Firouzi, MH Karimi-Jafari Journal of Molecular Graphics and Modelling 88, 183-193, 2019 | 8 | 2019 |
Histidine substitution in the most flexible fragments of firefly luciferase modifies its thermal stability M Rahban, N Salehi, AA Saboury, S Hosseinkhani, MH Karimi-Jafari, ... Archives of biochemistry and biophysics 629, 8-18, 2017 | 8 | 2017 |
Red/ox states of human protein disulfide isomerase regulate binding affinity of 17 beta-estradiol R Karamzadeh, MH Karimi-Jafari, AA Saboury, GH Salekdeh, ... Archives of Biochemistry and Biophysics 619, 35-44, 2017 | 7 | 2017 |
Computational evidence of new putative allosteric sites in the acetylcholinesterase receptor B Moghadam, M Ashouri, H Roohi, MH Karimi-Jafari Journal of Molecular Graphics and Modelling 107, 107981, 2021 | 6 | 2021 |