| Bacterial genomic epidemiology with mixed samples T Mäklin, T Kallonen, J Alanko, Ø Samuelsen, K Hegstad, V Mäkinen, ... Microbial Genomics 7 (11), 000691, 2021 | 28* | 2021 |
| Themisto: a scalable colored k-mer index for sensitive pseudoalignment against hundreds of thousands of bacterial genomes JN Alanko, J Vuohtoniemi, T Mäklin, SJ Puglisi Bioinformatics 39 (Supplement_1), i260–i269, 2023 | 26 | 2023 |
| Strong pathogen competition in neonatal gut colonisation T Mäklin, HA Thorpe, AK Pöntinen, RA Gladstone, Y Shao, A McNally, ... Nature Communications 13 (7417), 2022 | 26 | 2022 |
| High-resolution sweep metagenomics using fast probabilistic inference T Mäklin, T Kallonen, S David, CJ Boinett, B Pascoe, G Méric, ... Wellcome open research, 2021 | 26 | 2021 |
| Genomic and phenotypic characterization of Clostridium botulinum isolates from an infant botulism case suggests adaptation signatures to the gut FP Douillard, Y Derman, C Woudstra, K Selby, T Mäklin, MB Dorner, ... MBio 13 (3), e02384-21, 2022 | 7 | 2022 |
| Closing Clostridium botulinum Group III Genomes Using Long-Read Sequencing C Woudstra, T Mäklin, Y Derman, L Bano, H Skarin, C Mazuet, A Honkela, ... Microbiology resource announcements 10 (22), 10.1128/mra. 01364-20, 2021 | 4 | 2021 |
| Deep sequencing of Escherichia coli exposes colonisation diversity and impact of antibiotics in Punjab, Pakistan T Khawaja, T Mäklin, T Kallonen, RA Gladstone, AK Pöntinen, S Mero, ... Nature Communications 15 (1), 5196, 2024 | | 2024 |
| Exploring the pediatric nasopharyngeal bacterial microbiota with culture-based MALDI-TOF mass spectrometry and targeted metagenomic sequencing S Pol, T Kallonen, T Mäklin, P Sar, J Hopkins, S Soeng, T Miliya, CL Ling, ... Mbio, e00784-24, 2024 | | 2024 |
| Basic reproduction number for pandemic Escherichia coli clones is comparable to typical pandemic viruses FA Ojala, H Pesonen, RA Gladstone, T Maklin, G Tonkin-Hill, P Marttinen, ... bioRxiv, 2024.05. 08.593267, 2024 | | 2024 |
| Seamless, rapid and accurate analyses of outbreak genomic data using Split K-mer Analysis (SKA) R Derelle, J von Wachsmann, T Maeklin, J Hellewell, T Russell, A Lalvani, ... bioRxiv, 2024.03. 25.586631, 2024 | | 2024 |
| A Novel Prophage-like Insertion Element within yabG Triggers Early Entry into Sporulation in Clostridium botulinum FP Douillard, IM Portinha, Y Derman, C Woudstra, T Mäklin, MB Dorner, ... Viruses 15 (12), 2431, 2023 | | 2023 |
| Probabilistic Methods for High-Resolution Metagenomics T Mäklin Doctoral dissertation, University of Helsinki, 2022 | | 2022 |
| A longitudinal genomic and functional analysis of Clostridium botulinum isolated from an infant botulism case FP Douillard, Y Derman, C Woudstra, K Selby, T Mäklin, A Honkela, ... Toxicon 190, S17-S17, 2021 | | 2021 |
| Identifying Bacterial Strains from Sequencing Data T Mäklin, J Corander, A Honkela Data Mining for Systems Biology: Methods and Protocols, 1-7, 2018 | | 2018 |
| Probabilistic quantification of bacterial strain mixtures T Mäklin Master's thesis, University of Helsinki, 2017 | | 2017 |
